Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54670 - ( TTN8 (TITAN8) ATP binding / transporter )
97 Proteins interacs with AT3G54670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0565
| Class C:plastid | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1039
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.1112
| Class C:plastid | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Class C:plastid | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G32470 | PredictedPhenotypic Enhancement | FSW = 0.0946
| Class C:plastid | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT5G47690 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0349
| Class C:plastid | BINDING |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0436
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.0542
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G12900 | PredictedPhenotypic Enhancement | FSW = 0.0283
| Class C:plastid | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT2G40400 | PredictedPhenotypic Enhancement | FSW = 0.0243
| Class C:plastid | UNKNOWN PROTEIN |
AT5G14320 | PredictedPhenotypic Enhancement | FSW = 0.0053
| Class C:plastid | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G61000 | Predictedtwo hybridinteraction prediction | FSW = 0.1001
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT3G60640 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0476
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | PredictedSynthetic Rescue | FSW = 0.0433
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT2G42590 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G58510 | PredictedSynthetic Rescue | FSW = 0.0023
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0522
| Unknown | SELENOPROTEIN-RELATED |
AT3G45780 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0575
| Unknown | ATVAMP725 |
AT3G19930 | PredictedSynthetic Rescue | FSW = 0.1015
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G18524 | Predictedin vitroCo-expression | FSW = 0.0249
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0928
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.0864
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.0875
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G28860 | PredictedPhenotypic Enhancement | FSW = 0.0592
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G05190 | Predictedtwo hybridCo-expression | FSW = 0.0261
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0608
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT1G73690 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0519
| Unknown | CDKD11 (CYCLIN-DEPENDENT KINASE D11) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G72560 | PredictedPhenotypic Enhancement | FSW = 0.0383
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT3G18600 | PredictedSynthetic Rescue | FSW = 0.0046
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0335
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G39160 | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G44950 | Predictedtwo hybridinteraction prediction | FSW = 0.0229
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G79230 | PredictedSynthetic Lethality | FSW = 0.0570
| Unknown | MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
AT4G33730 | Predictedsynthetic growth defect | FSW = 0.0453
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0781
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G31200 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT2G31970 | Predictedtwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.0338
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G05490 | PredictedAffinity Capture-Western | FSW = 0.0724
| Unknown | SYN1 (SYNAPTIC 1) |
AT3G59550 | Predictedinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.0509
| Unknown | SYN3 |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT5G48070 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0084
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.0805
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G32380 | Predictedpull down | FSW = 0.0149
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
AT5G11650 | Predictedpull down | FSW = 0.0102
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT1G17070 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.0582
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G54560 | PredictedPhenotypic Suppression | FSW = 0.0121
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.1171
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0695
| Unknown | SGA2 |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G24960 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1291
| Unknown | UNKNOWN PROTEIN |
AT2G27170 | Predictedinteraction predictiontwo hybridReconstituted Complexin vivoCo-purificationCo-purificationColocalizationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor pairtwo hybridco-fractionationCo-fractionationinterologs mappingin vivointeraction predictionCo-expression | FSW = 0.1244
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G29190 | PredictedPhenotypic Enhancement | FSW = 0.0466
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G38600 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Enhancement | FSW = 0.0224
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.0616
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G19670 | PredictedPhenotypic Enhancement | FSW = 0.0295
| Unknown | PROTEIN BINDING |
AT3G47460 | Predictedinteraction predictiontwo hybridinterologs mappingCo-expression | FSW = 0.0566
| Unknown | ATSMC2 TRANSPORTER |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.0054
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G53650 | PredictedPhenotypic Suppression | FSW = 0.0143
| Unknown | HISTONE H2B PUTATIVE |
AT1G08260 | Predictedtwo hybridSynthetic Lethalitysynthetic growth defectCo-expression | FSW = 0.0288
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G09270 | PredictedPhenotypic Enhancement | FSW = 0.0257
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.0080
| Unknown | UNKNOWN PROTEIN |
AT1G13180 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G26530 | PredictedPhenotypic Enhancement | FSW = 0.0229
| Unknown | UNKNOWN PROTEIN |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.0708
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G27060 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT4G16360 | PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT4G18905 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0039
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G27180 | Predictedtwo hybrid | FSW = 0.0204
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G39050 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G05070 | PredictedPhenotypic Enhancement | FSW = 0.0619
| Unknown | ZINC ION BINDING |
AT5G15540 | PredictedAffinity Capture-Western | FSW = 0.0441
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G19360 | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G38110 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G53770 | PredictedAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.0249
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G57160 | PredictedPhenotypic Suppression | FSW = 0.0046
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.0593
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G13020 | PredictedPhenotypic Enhancement | FSW = 0.0355
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G13010 | PredictedPhenotypic Suppression | FSW = 0.0095
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G49970 | PredictedPhenotypic Suppression | FSW = 0.0433
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G59850 | PredictedSynthetic Rescue | FSW = 0.0173
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
AT5G64240 | PredictedPhenotypic Enhancement | FSW = 0.0107
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G16270 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinterologs mappingReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0190
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT4G18900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0047
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54630 | Predictedinterologs mappingin vitrotwo hybridinteraction predictionCo-expression | FSW = 0.0134
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT1G10930 | Predictedin vivo | FSW = 0.0086
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G55255 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G54670 | Predictedinteraction prediction | FSW = 0.0330
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454