Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54700 - ( carbohydrate transmembrane transporter/ phosphate transmembrane transporter/ sugarhydrogen symporter )
13 Proteins interacs with AT3G54700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G21180 | Predictedtwo hybrid | FSW = 0.0642
| Class C:plasma membrane | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G43360 | PredictedPhylogenetic profile method | FSW = 0.1513
| Class C:plasma membrane | PHT3 (PHOSPHATE TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G01320 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT5G47560 | PredictedPhenotypic Suppressioninterologs mappingSynthetic LethalityPhenotypic Enhancement | FSW = 0.0972
| Unknown | TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) MALATE TRANSMEMBRANE TRANSPORTER/ SODIUMDICARBOXYLATE SYMPORTER |
AT3G26570 | Predictedinterologs mappingSynthetic LethalityPhenotypic Enhancement | FSW = 0.1250
| Unknown | PHT21 (PHOSPHATE TRANSPORTER 21) LOW AFFINITY PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G15220 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | PROTEIN KINASE PUTATIVE |
AT4G23660 | Predictedtwo hybrid | FSW = 0.0504
| Unknown | ATPPT1 (ARABIDOPSIS THALIANA POLYPRENYLTRANSFERASE 1) 4-HYDROXYBENZOATE NONAPRENYLTRANSFERASE |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0624
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G16570 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G49490 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT5G60020 | Predictedtwo hybrid | FSW = 0.0529
| Unknown | LAC17 (LACCASE 17) LACCASE |
AT5G43340 | PredictedPhylogenetic profile method | FSW = 0.0683
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454