Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54860 - ( vacuolar protein sorting protein putative )
30 Proteins interacs with AT3G54860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G38020 | Experimentalco-fractionationCo-fractionationAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.5435
| Class D:cytosol (p = 0.67) | VCL1 (VACUOLELESS 1) |
AT2G05170 | Experimentalcoimmunoprecipitation | FSW = 0.2511
| Class D:cytosol (p = 0.67) | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT5G39510 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.2314
| Unknown | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G46860 | PredictedAffinity Capture-Western | FSW = 0.1097
| Unknown | VAM3 SNAP RECEPTOR |
AT1G22740 | PredictedAffinity Capture-WesternColocalization | FSW = 0.1121
| Unknown | RABG3B GTP BINDING |
AT1G79590 | PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationAffinity Capture-WesternReconstituted Complex | FSW = 0.1807
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT5G58060 | PredictedCo-purification | FSW = 0.1097
| Unknown | YKT61 |
AT3G09820 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G16100 | PredictedColocalizationAffinity Capture-Western | FSW = 0.1492
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT5G03300 | Predictedtwo hybrid | FSW = 0.0580
| Unknown | ADK2 (ADENOSINE KINASE 2) ADENOSINE KINASE/ COPPER ION BINDING / KINASE |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.1272
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT1G12470 | Predictedin vivoAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationin vivoAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.5317
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G08190 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.2314
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1215
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1141
| Unknown | SGA2 |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0883
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.1179
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G28390 | Predictedtwo hybrid | FSW = 0.1394
| Unknown | SAND FAMILY PROTEIN |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1449
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.1154
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0623
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.1196
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1135
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1445
| Unknown | ENDONUCLEASE PUTATIVE |
AT1G32270 | PredictedAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0392
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT4G03440 | Predictedin vivo | FSW = 0.0290
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1528
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1270
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.1313
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454