Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G55220 - ( splicing factor putative )
52 Proteins interacs with AT3G55220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G02840 | PredictedAffinity Capture-MS | FSW = 0.5611
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5109
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5682
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3645
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vivoin vivoSynthetic Lethality | FSW = 0.5070
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4959
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5867
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3992
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G42590 | Predictedsynthetic growth defect | FSW = 0.0139
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G25754 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | UNKNOWN PROTEIN |
AT1G56330 | Predictedinterologs mapping | FSW = 0.0257
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0894
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | YLS8 CATALYTIC |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT2G18510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1828
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.3441
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G19840 | PredictedAffinity Capture-MS | FSW = 0.3321
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.1242
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.3446
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT2G36010 | Predictedtwo hybrid | FSW = 0.0303
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MS | FSW = 0.4715
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.5544
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.1780
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G20580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6119
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MS | FSW = 0.3649
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT5G44200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT4G30330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4156
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT4G15900 | PredictedAffinity Capture-MS | FSW = 0.2125
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G53710 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G27620 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G47240 | Predictedtwo hybrid | FSW = 0.0479
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT1G07170 | PredictedAffinity Capture-MSAffinity Capture-MSin vivoAffinity Capture-MS | FSW = 0.1825
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PHF5-LIKE (INTERPROIPR005345) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G300001) HAS 292 BLAST HITS TO 292 PROTEINS IN 142 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 110 FUNGI - 75 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 60 (SOURCE NCBI BLINK) |
AT2G02570 | PredictedAffinity Capture-MS | FSW = 0.1554
| Unknown | NUCLEIC ACID BINDING |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vivoin vivoAffinity Capture-MS | FSW = 0.5669
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT1G14640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4961
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.3202
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.4579
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G80930 | PredictedAffinity Capture-MS | FSW = 0.2048
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G32600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3017
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G03340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2580
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G05760 | PredictedAffinity Capture-MS | FSW = 0.2170
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G03430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2955
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G21110 | PredictedAffinity Capture-MS | FSW = 0.1984
| Unknown | G10 FAMILY PROTEIN |
AT5G06160 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.5303
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G19680 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G28740 | PredictedAffinity Capture-MS | FSW = 0.2490
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3618
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G46400 | PredictedAffinity Capture-MS | FSW = 0.5097
| Unknown | PRP39-2 |
AT2G23070 | Predictedsynthetic growth defect | FSW = 0.0058
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454