Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55360 - ( CER10 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) )

48 Proteins interacs with AT3G55360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01720

Predicted

two hybrid

interaction prediction

FSW = 0.0390

Class C:

plasma membrane

endoplasmic reticulum

RIBOPHORIN I FAMILY PROTEIN
AT5G05670

Predicted

two hybrid

FSW = 0.0712

Class C:

plasma membrane

endoplasmic reticulum

SIGNAL RECOGNITION PARTICLE BINDING
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0185

Class C:

plasma membrane

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G33210

Predicted

Affinity Capture-MS

FSW = 0.0038

Class C:

plasma membrane

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0241

Class C:

plasma membrane

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G02500

Predicted

Affinity Capture-MS

FSW = 0.0157

Class C:

plasma membrane

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT3G17390

Predicted

Affinity Capture-MS

FSW = 0.0157

Class C:

plasma membrane

MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE
AT3G25540

Predicted

interaction prediction

FSW = 0.0416

Class C:

plasma membrane

LAG1
AT4G01320

Predicted

two hybrid

interaction prediction

FSW = 0.0449

Class C:

endoplasmic reticulum

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G07100

Predicted

two hybrid

two hybrid

FSW = 0.0039

Class C:

endoplasmic reticulum

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G47120

Predicted

two hybrid

two hybrid

FSW = 0.0196

Class C:

endoplasmic reticulum

ATBI1 (BAX INHIBITOR 1)
AT1G67730

Predicted

two hybrid

FSW = 0.1076

Class C:

endoplasmic reticulum

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT1G76400

Predicted

two hybrid

FSW = 0.0126

Class C:

endoplasmic reticulum

RIBOPHORIN I FAMILY PROTEIN
AT3G23990

Predicted

Affinity Capture-MS

FSW = 0.0102

Unknown

HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT1G64790Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

BINDING
AT1G05940

Predicted

interaction prediction

FSW = 0.0533

Unknown

CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER
AT1G58030

Predicted

two hybrid

FSW = 0.0741

Unknown

CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER
AT1G07420

Predicted

two hybrid

interaction prediction

FSW = 0.1926

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT5G13120

Predicted

two hybrid

FSW = 0.0330

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G23860

Predicted

two hybrid

two hybrid

FSW = 0.0211

Unknown

PHD FINGER PROTEIN-RELATED
AT4G24960

Predicted

interaction prediction

FSW = 0.0678

Unknown

ATHVA22D
AT5G50720

Predicted

two hybrid

FSW = 0.0671

Unknown

ATHVA22E
AT1G69700

Predicted

two hybrid

FSW = 0.0575

Unknown

ATHVA22C
AT1G72550

Predicted

Affinity Capture-MS

FSW = 0.0314

Unknown

TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN
AT5G03730

Predicted

two hybrid

two hybrid

FSW = 0.0080

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G17190

Predicted

two hybrid

two hybrid

FSW = 0.0083

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G17200

Predicted

two hybrid

FSW = 0.0330

Unknown

UBIQUITIN FAMILY PROTEIN
AT2G36310

Predicted

two hybrid

FSW = 0.0989

Unknown

URH1 (URIDINE-RIBOHYDROLASE 1) ADENOSINE NUCLEOSIDASE/ HYDROLASE/ INOSINE NUCLEOSIDASE/ URIDINE NUCLEOSIDASE
AT2G42330

Predicted

two hybrid

FSW = 0.0314

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT4G26750

Predicted

two hybrid

two hybrid

FSW = 0.0116

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G47130

Predicted

two hybrid

FSW = 0.0183

Unknown

BAX INHIBITOR-1 FAMILY / BI-1 FAMILY
AT5G49010

Predicted

two hybrid

two hybrid

FSW = 0.0083

Unknown

SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)
AT1G13580

Predicted

two hybrid

FSW = 0.0371

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G16570

Predicted

two hybrid

interaction prediction

FSW = 0.2361

Unknown

GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN
AT2G16950

Predicted

Affinity Capture-MS

FSW = 0.0264

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G37925

Predicted

two hybrid

FSW = 0.0143

Unknown

COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G06460

Predicted

two hybrid

Phenotypic Enhancement

Affinity Capture-Western

interaction prediction

FSW = 0.0770

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT1G08750

Predicted

two hybrid

interaction prediction

FSW = 0.2129

Unknown

GPI-ANCHOR TRANSAMIDASE PUTATIVE
AT4G32530

Predicted

two hybrid

interaction prediction

FSW = 0.0748

Unknown

VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT5G17860

Predicted

two hybrid

FSW = 0.0157

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT4G22330

Predicted

two hybrid

interaction prediction

FSW = 0.0346

Unknown

ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES
AT2G22425

Predicted

Affinity Capture-MS

FSW = 0.1356

Unknown

PEPTIDASE
AT1G05620

Predicted

two hybrid

FSW = 0.0692

Unknown

URH2 (URIDINE-RIBOHYDROLASE 2) HYDROLASE
AT1G17070

Predicted

two hybrid

FSW = 0.0077

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT2G18770

Predicted

two hybrid

interaction prediction

FSW = 0.1190

Unknown

SIGNAL RECOGNITION PARTICLE BINDING
AT1G24470

Predicted

two hybrid

FSW = 0.1322

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G25610

Predicted

two hybrid

FSW = 0.1047

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT1G54115

Predicted

two hybrid

FSW = 0.1509

Unknown

CCX4 (CATION CALCIUM EXCHANGER 4) CATIONCATION ANTIPORTER

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454