Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55360 - ( CER10 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) )
48 Proteins interacs with AT3G55360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | Predictedtwo hybridinteraction prediction | FSW = 0.0390
| Class C:plasma membraneendoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT5G05670 | Predictedtwo hybrid | FSW = 0.0712
| Class C:plasma membraneendoplasmic reticulum | SIGNAL RECOGNITION PARTICLE BINDING |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0185
| Class C:plasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G33210 | PredictedAffinity Capture-MS | FSW = 0.0038
| Class C:plasma membrane | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0241
| Class C:plasma membrane | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:plasma membrane | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:plasma membrane | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT3G25540 | Predictedinteraction prediction | FSW = 0.0416
| Class C:plasma membrane | LAG1 |
AT4G01320 | Predictedtwo hybridinteraction prediction | FSW = 0.0449
| Class C:endoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G07100 | Predictedtwo hybridtwo hybrid | FSW = 0.0039
| Class C:endoplasmic reticulum | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G47120 | Predictedtwo hybridtwo hybrid | FSW = 0.0196
| Class C:endoplasmic reticulum | ATBI1 (BAX INHIBITOR 1) |
AT1G67730 | Predictedtwo hybrid | FSW = 0.1076
| Class C:endoplasmic reticulum | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G76400 | Predictedtwo hybrid | FSW = 0.0126
| Class C:endoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
AT3G23990 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | BINDING |
AT1G05940 | Predictedinteraction prediction | FSW = 0.0533
| Unknown | CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) CATIONIC AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT1G58030 | Predictedtwo hybrid | FSW = 0.0741
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.1926
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT5G13120 | Predictedtwo hybrid | FSW = 0.0330
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT4G23860 | Predictedtwo hybridtwo hybrid | FSW = 0.0211
| Unknown | PHD FINGER PROTEIN-RELATED |
AT4G24960 | Predictedinteraction prediction | FSW = 0.0678
| Unknown | ATHVA22D |
AT5G50720 | Predictedtwo hybrid | FSW = 0.0671
| Unknown | ATHVA22E |
AT1G69700 | Predictedtwo hybrid | FSW = 0.0575
| Unknown | ATHVA22C |
AT1G72550 | PredictedAffinity Capture-MS | FSW = 0.0314
| Unknown | TRNA SYNTHETASE BETA SUBUNIT FAMILY PROTEIN |
AT5G03730 | Predictedtwo hybridtwo hybrid | FSW = 0.0080
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G17190 | Predictedtwo hybridtwo hybrid | FSW = 0.0083
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G17200 | Predictedtwo hybrid | FSW = 0.0330
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT2G36310 | Predictedtwo hybrid | FSW = 0.0989
| Unknown | URH1 (URIDINE-RIBOHYDROLASE 1) ADENOSINE NUCLEOSIDASE/ HYDROLASE/ INOSINE NUCLEOSIDASE/ URIDINE NUCLEOSIDASE |
AT2G42330 | Predictedtwo hybrid | FSW = 0.0314
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT4G26750 | Predictedtwo hybridtwo hybrid | FSW = 0.0116
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT5G47130 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | BAX INHIBITOR-1 FAMILY / BI-1 FAMILY |
AT5G49010 | Predictedtwo hybridtwo hybrid | FSW = 0.0083
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0371
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G16570 | Predictedtwo hybridinteraction prediction | FSW = 0.2361
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0264
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G37925 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G06460 | Predictedtwo hybridPhenotypic EnhancementAffinity Capture-Westerninteraction prediction | FSW = 0.0770
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.2129
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT4G32530 | Predictedtwo hybridinteraction prediction | FSW = 0.0748
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT5G17860 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT4G22330 | Predictedtwo hybridinteraction prediction | FSW = 0.0346
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT2G22425 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | PEPTIDASE |
AT1G05620 | Predictedtwo hybrid | FSW = 0.0692
| Unknown | URH2 (URIDINE-RIBOHYDROLASE 2) HYDROLASE |
AT1G17070 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT2G18770 | Predictedtwo hybridinteraction prediction | FSW = 0.1190
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT1G24470 | Predictedtwo hybrid | FSW = 0.1322
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G25610 | Predictedtwo hybrid | FSW = 0.1047
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT1G54115 | Predictedtwo hybrid | FSW = 0.1509
| Unknown | CCX4 (CATION CALCIUM EXCHANGER 4) CATIONCATION ANTIPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454