Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55410 - ( 2-oxoglutarate dehydrogenase E1 component putative / oxoglutarate decarboxylase putative / alpha-ketoglutaric dehydrogenase putative )
18 Proteins interacs with AT3G55410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G55070 | Predictedin vitroAffinity Capture-MS | FSW = 0.1325
| Class C:mitochondrion | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT1G48030 | PredictedAffinity Capture-MSAffinity Capture-MSin vitro | FSW = 0.1159
| Class C:mitochondrion | MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE |
AT4G26910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2299
| Class C:mitochondrion | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT3G09810 | PredictedPhenotypic SuppressionGene neighbors methodCo-expression | FSW = 0.0679
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G65750 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4246
| Class C:mitochondrion | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT4G16720 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | SGP2 GTP BINDING |
AT1G59760 | PredictedAffinity Capture-MS | FSW = 0.0618
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT5G57160 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.0587
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT3G06000 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G54210 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0622
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454