Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55410 - ( 2-oxoglutarate dehydrogenase E1 component putative / oxoglutarate decarboxylase putative / alpha-ketoglutaric dehydrogenase putative )

18 Proteins interacs with AT3G55410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G55070

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1325

Class C:

mitochondrion

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT1G48030

Predicted

Affinity Capture-MS

Affinity Capture-MS

in vitro

FSW = 0.1159

Class C:

mitochondrion

MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE
AT4G26910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2299

Class C:

mitochondrion

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT3G09810

Predicted

Phenotypic Suppression

Gene neighbors method

Co-expression

FSW = 0.0679

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT5G65750

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4246

Class C:

mitochondrion

2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.0167

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT4G16720

Predicted

Affinity Capture-MS

FSW = 0.0629

Unknown

60S RIBOSOMAL PROTEIN L15 (RPL15A)
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.0157

Unknown

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G09760

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT3G21700

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

SGP2 GTP BINDING
AT1G59760

Predicted

Affinity Capture-MS

FSW = 0.0618

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT5G57160

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G09900

Predicted

Affinity Capture-MS

FSW = 0.0587

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT3G06000

Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G54210

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

ATG12A (AUTOPHAGY 12 A) PROTEIN BINDING
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0622

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G29965

Predicted

Affinity Capture-MS

FSW = 0.0632

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AA)
AT1G36240

Predicted

Affinity Capture-MS

FSW = 0.0399

Unknown

60S RIBOSOMAL PROTEIN L30 (RPL30A)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454