Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G55460 - ( SCL30 RNA binding / nucleic acid binding / nucleotide binding )

13 Proteins interacs with AT3G55460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55310

Experimental

Reconstituted Complex

in vitro

FSW = 0.6173

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR33 RNA BINDING / PROTEIN BINDING
AT5G18810

Experimental

in vitro

Reconstituted Complex

FSW = 0.8765

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

in vitro

Reconstituted Complex

FSW = 0.9231

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09140

Experimental

Reconstituted Complex

in vitro

FSW = 0.5818

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SF2/ASF-LIKE SPLICING MODULATOR (SRP30)
AT1G23860

Experimental

Reconstituted Complex

in vitro

FSW = 0.6124

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT1G02840

Experimental

Reconstituted Complex

in vitro

FSW = 0.4119

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37340

Experimental

Reconstituted Complex

two hybrid

FSW = 0.7446

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.6676

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT4G31580

Experimental

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.1559

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SRZ-22 PROTEIN BINDING
AT5G64200

Experimental

Reconstituted Complex

in vitro

FSW = 0.3333

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G32420

Experimental

two hybrid

FSW = 0.1975

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G63400

Experimental

two hybrid

Reconstituted Complex

FSW = 0.3789

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT1G53720

Experimental

Reconstituted Complex

in vitro

FSW = 0.4274

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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