Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56150 - ( EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) translation initiation factor )
45 Proteins interacs with AT3G56150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G25780 | Experimentalcoimmunoprecipitation | FSW = 0.3472
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G57290 | ExperimentalAffinity Capture-Westerntwo hybridcoimmunoprecipitation | FSW = 0.1785
| Unknown | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
AT1G09570 | Experimental | FSW = 0.0139
| Unknown | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT3G61140 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.0700
| Unknown | FUS6 (FUSCA 6) |
AT4G14110 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.0934
| Unknown | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT1G02090 | Experimentalpull down | FSW = 0.1541
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT1G10840 | Experimentaltwo hybrid | FSW = 0.2747
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT5G27640 | ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.0729
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0836
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | DDL (DAWDLE) |
AT3G58510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0916
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT3G11400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4745
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2202
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT5G20920 | Predictedtwo hybrid | FSW = 0.1550
| Unknown | EIF2 BETA TRANSLATION INITIATION FACTOR |
AT4G11420 | Predictedinteraction predictionAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexCo-purificationAffinity Capture-Westerninterologs mappingCo-expression | FSW = 0.4281
| Unknown | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
AT1G77840 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MStwo hybridCo-purificationinterologs mappinginteraction prediction | FSW = 0.3303
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT2G44680 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0291
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT3G10330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0507
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G55620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0249
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G57150 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0393
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0418
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.1614
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT2G31300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0104
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT4G30800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0871
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G54290 | Predictedtwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-MSReconstituted ComplexReconstituted ComplexAffinity Capture-WesternReconstituted Complextwo hybridtwo hybridAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSSynthetic Rescueinterologs mappinginteraction prediction | FSW = 0.0627
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G18650 | Predictedtwo hybridtwo hybrid | FSW = 0.0220
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G04170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1922
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G46280 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationco-fractionationCo-fractionationinterologs mappinginteraction prediction | FSW = 0.2184
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT3G05090 | PredictedAffinity Capture-MS | FSW = 0.1154
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G09100 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0814
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G15970 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN |
AT3G20630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0272
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT3G59410 | PredictedSynthetic Lethality | FSW = 0.0192
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | ATRLI2 TRANSPORTER |
AT5G56740 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0400
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G31985 | PredictedSynthetic Rescue | FSW = 0.0098
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G35680 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0413
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE |
AT5G06000 | PredictedAffinity Capture-MSAffinity Capture-Westernin vitroin vivoCo-expression | FSW = 0.2155
| Unknown | EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR |
AT4G33250 | Predictedin vitroCo-expression | FSW = 0.1681
| Unknown | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) TRANSLATION INITIATION FACTOR |
AT1G66070 | Predictedin vivo | FSW = 0.0853
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT3G22860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4577
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454