Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56440 - ( AtATG18d )

16 Proteins interacs with AT3G56440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G05150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3810

Unknown

ATATG18E
AT2G01690

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0689

Unknown

BINDING
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.0193

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G16630

Predicted

two hybrid

FSW = 0.0340

Unknown

RAD4 DAMAGED DNA BINDING
AT1G22940

Predicted

Affinity Capture-MS

FSW = 0.0561

Unknown

TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0113

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G17720

Predicted

Affinity Capture-MS

FSW = 0.0353

Unknown

ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G14205

Predicted

Phenotypic Enhancement

FSW = 0.3048

Unknown

PHOSPHOINOSITIDE PHOSPHATASE FAMILY PROTEIN
AT3G56120

Predicted

Affinity Capture-MS

FSW = 0.1200

Unknown

MET-10+ LIKE FAMILY PROTEIN
AT2G31260

Predicted

Affinity Capture-Western

FSW = 0.0200

Unknown

APG9 (AUTOPHAGY 9)
AT2G37840

Predicted

biochemical

FSW = 0.0396

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G09920

Predicted

Synthetic Lethality

FSW = 0.0692

Unknown

PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE
AT4G33240

Predicted

two hybrid

FSW = 0.0770

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.0099

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT2G40810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1296

Unknown

ATATG18C
AT3G62770

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0478

Unknown

ATATG18A

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454