Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56760 - ( calcium-dependent protein kinase putative / CDPK putative )
29 Proteins interacs with AT3G56760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07940 | PredictedPhenotypic Enhancement | FSW = 0.0714
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G50310 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0616
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G50530 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0269
| Class C:plasma membrane | CRK (CDPK-RELATED KINASE) ATP BINDING / CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G08800 | PredictedAffinity Capture-MS | FSW = 0.0436
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:plasma membrane | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G22120 | Predictedtwo hybrid | FSW = 0.0944
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0134
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G37870 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT1G74560 | Predictedtwo hybrid | FSW = 0.0471
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT1G07180 | Predictedtwo hybridsynthetic growth defectSynthetic Lethality | FSW = 0.0285
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT2G44860 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT3G21700 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0241
| Unknown | SGP2 GTP BINDING |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT3G03950 | Predictedinterologs mapping | FSW = 0.0672
| Unknown | PROTEIN BINDING |
AT1G18100 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G44590 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexColocalizationAffinity Capture-WesternCo-purificationfluorescence acceptor donor pairfluorescence acceptor donor pairtwo hybrid | FSW = 0.2245
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | Predictedtwo hybrid | FSW = 0.0339
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G77670 | Predictedsynthetic growth defect | FSW = 0.0627
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT2G27340 | PredictedPhenotypic Suppression | FSW = 0.0336
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT3G01350 | PredictedPhenotypic Enhancement | FSW = 0.2198
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G21490 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27960 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor pairReconstituted ComplexCo-purificationinterologs mapping | FSW = 0.0868
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0237
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G52350 | PredictedAffinity Capture-Western | FSW = 0.1109
| Unknown | ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING |
AT5G66630 | Predictedtwo hybrid | FSW = 0.2000
| Unknown | DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING |
AT1G63400 | PredictedGene fusion method | FSW = 0.0682
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G06145 | PredictedGene fusion method | FSW = 0.0574
| Unknown | EMB1444 (EMBRYO DEFECTIVE 1444) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454