Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56760 - ( calcium-dependent protein kinase putative / CDPK putative )

29 Proteins interacs with AT3G56760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07940Predicted

Phenotypic Enhancement

FSW = 0.0714

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G50310

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0616

Class C:

plasma membrane

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G50530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0269

Class C:

plasma membrane

CRK (CDPK-RELATED KINASE) ATP BINDING / CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G08800Predicted

Affinity Capture-MS

FSW = 0.0436

Class C:

plasma membrane

PROTEIN KINASE PUTATIVE
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0102

Class C:

plasma membrane

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT4G22120

Predicted

two hybrid

FSW = 0.0944

Class C:

plasma membrane

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0134

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G37870

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT1G74560

Predicted

two hybrid

FSW = 0.0471

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT1G07180

Predicted

two hybrid

synthetic growth defect

Synthetic Lethality

FSW = 0.0285

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT2G44860

Predicted

Affinity Capture-MS

FSW = 0.0070

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT3G21700

Predicted

Affinity Capture-Western

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0241

Unknown

SGP2 GTP BINDING
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT3G03950

Predicted

interologs mapping

FSW = 0.0672

Unknown

PROTEIN BINDING
AT1G18100

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT3G44590

Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Colocalization

Affinity Capture-Western

Co-purification

fluorescence acceptor donor pair

fluorescence acceptor donor pair

two hybrid

FSW = 0.2245

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT1G10090

Predicted

Affinity Capture-MS

FSW = 0.0362

Unknown

UNKNOWN PROTEIN
AT1G20693

Predicted

two hybrid

FSW = 0.0339

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G77670

Predicted

synthetic growth defect

FSW = 0.0627

Unknown

AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN
AT2G27340

Predicted

Phenotypic Suppression

FSW = 0.0336

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G01350

Predicted

Phenotypic Enhancement

FSW = 0.2198

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G21490

Predicted

two hybrid

FSW = 0.0320

Unknown

NDB3 NADH DEHYDROGENASE
AT4G27960

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

fluorescence acceptor donor pair

fluorescence acceptor donor pair

Reconstituted Complex

Co-purification

interologs mapping

FSW = 0.0868

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT5G24670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0237

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G52350

Predicted

Affinity Capture-Western

FSW = 0.1109

Unknown

ATEXO70A3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A3) PROTEIN BINDING
AT5G66630

Predicted

two hybrid

FSW = 0.2000

Unknown

DAR5 (DA1-RELATED PROTEIN 5) ZINC ION BINDING
AT1G63400

Predicted

Gene fusion method

FSW = 0.0682

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G06145

Predicted

Gene fusion method

FSW = 0.0574

Unknown

EMB1444 (EMBRYO DEFECTIVE 1444)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454