Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56850 - ( AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) DNA binding / transcription activator/ transcription factor )

9 Proteins interacs with AT3G56850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02140

Experimental

FSW = 0.3208

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)
AT1G69260

Experimental

FSW = 0.4635

Unknown

AFP1 (ABI FIVE BINDING PROTEIN)
AT1G13740

Experimental

FSW = 0.4372

Unknown

AFP2 (ABI FIVE BINDING PROTEIN 2)
AT3G29575

Experimental

FSW = 0.3208

Unknown

AFP3 (ABI FIVE BINDING PROTEIN 3)
AT2G41070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4605

Class C:

nucleus

EEL (ENHANCED EM LEVEL) DNA BINDING / TRANSCRIPTION FACTOR
AT1G69780

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.1131

Class C:

nucleus

ATHB13 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT3G61150

Predicted

in vitro

in vivo

FSW = 0.1065

Unknown

HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G16710

Predicted

in vitro

in vivo

FSW = 0.1303

Unknown

HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT1G45249

Predicted

in vitro

FSW = 0.1973

Unknown

ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454