Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G56990 - ( EDA7 (embryo sac development arrest 7) )
37 Proteins interacs with AT3G56990| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G20290
   | PredictedAffinity Capture-MS | FSW = 0.1916
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.2731
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.2178
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G21540
| PredictedAffinity Capture-MS | FSW = 0.4130
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G54910
| PredictedAffinity Capture-MS | FSW = 0.0807
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G18130
| PredictedAffinity Capture-MS | FSW = 0.0647
| Class C:nucleus | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4412
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT3G57000
| PredictedAffinity Capture-MS | FSW = 0.5687
| Class C:nucleus | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
| AT1G18080
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0488
| Unknown | ATARCA NUCLEOTIDE BINDING |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT2G47990
| PredictedAffinity Capture-MS | FSW = 0.3273
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G10490
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.3712
| Unknown | UNKNOWN PROTEIN |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.1011
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT5G53360
| Predictedtwo hybrid | FSW = 0.0080
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT5G61330
| Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionCo-expression | FSW = 0.3446
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT3G61790
| Predictedtwo hybrid | FSW = 0.0235
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT1G06720
| PredictedAffinity Capture-MS | FSW = 0.4956
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT2G17250
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4676
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT3G56510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2285
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
| AT1G15440
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2083
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.3260
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G69070
| PredictedAffinity Capture-MS | FSW = 0.3752
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.2534
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT3G01160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1894
| Unknown | UNKNOWN PROTEIN |
| AT3G09720
| PredictedAffinity Capture-MS | FSW = 0.3087
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G10530
| PredictedAffinity Capture-MS | FSW = 0.3646
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT4G28200
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4752
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT4G30991 | PredictedAffinity Capture-MS | FSW = 0.4246
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT5G08420
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3895
| Unknown | RNA BINDING |
| AT4G04940
| PredictedAffinity Capture-MS | FSW = 0.4691
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.4901
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G15750
| PredictedAffinity Capture-MS | FSW = 0.5042
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT3G58040
| Predictedtwo hybrid | FSW = 0.0143
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT5G67380
| Predictedinteraction prediction | FSW = 0.0207
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
| AT5G06600
| Predictedinteraction prediction | FSW = 0.0124
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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