Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57050 - ( CBL (cystathionine beta-lyase) cystathionine beta-lyase )
35 Proteins interacs with AT3G57050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.2117
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G45770 | PredictedSynthetic Rescue | FSW = 0.0469
| Class C:plastid | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G34740 | Predictedinteraction prediction | FSW = 0.0504
| Class C:plastid | ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) AMIDOPHOSPHORIBOSYLTRANSFERASE |
AT5G16150 | PredictedAffinity Capture-Western | FSW = 0.0686
| Class C:plastid | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.0635
| Class C:plastid | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT1G33320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0483
| Class C:plastid | CYSTATHIONINE GAMMA-SYNTHASE CHLOROPLAST PUTATIVE / O-SUCCINYLHOMOSERINE (THIOL)-LYASE PUTATIVE |
AT4G36130 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0779
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT2G45200 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-crystal Structure | FSW = 0.0828
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT2G42590 | PredictedSynthetic Rescue | FSW = 0.0198
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G47510 | PredictedSynthetic Lethality | FSW = 0.1112
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G03540 | PredictedAffinity Capture-Western | FSW = 0.0697
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT2G30110 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0078
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G08370 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | DCP1 (DECAPPING 1) M7G(5)PPPN DIPHOSPHATASE/ PROTEIN HOMODIMERIZATION |
AT3G18600 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0701
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G10330 | Predictedinterologs mapping | FSW = 0.0400
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT5G27450 | PredictedGene fusion methodCo-expression | FSW = 0.1053
| Unknown | MK (MEVALONATE KINASE) MEVALONATE KINASE |
AT4G38260 | Predictedtwo hybridtwo hybrid | FSW = 0.0229
| Unknown | UNKNOWN PROTEIN |
AT1G12130 | PredictedAffinity Capture-Western | FSW = 0.0714
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G34340 | PredictedAffinity Capture-Western | FSW = 0.0624
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT3G11830 | Predictedinterologs mapping | FSW = 0.0150
| Unknown | CHAPERONIN PUTATIVE |
AT1G49520 | Predictedsynthetic growth defect | FSW = 0.0945
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.0766
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT2G16570 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) AMIDOPHOSPHORIBOSYLTRANSFERASE |
AT2G32220 | PredictedAffinity Capture-Western | FSW = 0.0264
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT3G44190 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.2667
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT4G03430 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0087
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G17510 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1519
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
AT5G17290 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT4G22140 | PredictedSynthetic Lethality | FSW = 0.0120
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G26510 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0736
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G46410 | PredictedAffinity Capture-Western | FSW = 0.0486
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT1G64660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0483
| Unknown | ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) CATALYTIC/ METHIONINE GAMMA-LYASE |
AT1G12970 | PredictedGene fusion method | FSW = 0.0566
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT4G05320 | PredictedGene fusion method | FSW = 0.0277
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454