Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57230 - ( AGL16 (AGAMOUS-LIKE 16) transcription factor )

22 Proteins interacs with AT3G57230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G27070

Experimental

two hybrid

FSW = 0.1248

Class A:

nucleus

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL53 TRANSCRIPTION FACTOR
AT4G24540

Experimental

two hybrid

FSW = 0.5523

Class A:

nucleus

Class B:

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G69120

Experimental

two hybrid

FSW = 0.5098

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT4G09960

Experimental

two hybrid

FSW = 0.5475

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G37940

Experimental

two hybrid

FSW = 0.6487

Class A:

nucleus

Class D:

plastid (p = 0.78)

 AGL21 TRANSCRIPTION FACTOR
AT1G31140

Experimental

two hybrid

FSW = 0.2963

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL63 (AGAMOUS-LIKE 63) DNA BINDING / TRANSCRIPTION FACTOR
AT1G24260

Experimental

two hybrid

FSW = 0.4840

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G15800

Experimental

two hybrid

FSW = 0.6421

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR
AT3G02310

Experimental

two hybrid

FSW = 0.3054

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G18960

Experimental

two hybrid

FSW = 0.4268

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT2G42830

Experimental

two hybrid

FSW = 0.5051

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SHP2 (SHATTERPROOF 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G71692

Experimental

two hybrid

FSW = 0.4821

Class B:

unclear

nucleus

Class D:

mitochondrion (p = 0.82)

 AGL12 (AGAMOUS-LIKE 12) TRANSCRIPTION FACTOR
AT5G13790

Experimental

two hybrid

FSW = 0.5868

Class B:

plasma membrane

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR
AT2G22630

Experimental

two hybrid

FSW = 0.4083

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 AGL17 (AGAMOUS-LIKE 17) TRANSCRIPTION FACTOR
AT4G11880

Experimental

two hybrid

FSW = 0.7722

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL14 (AGAMOUS-LIKE 14) DNA BINDING / TRANSCRIPTION FACTOR
AT2G45660

Experimental

two hybrid

FSW = 0.6725

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR
AT3G58780

Experimental

two hybrid

FSW = 0.6872

Class D:

nucleus (p = 0.78)

 SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

two hybrid

FSW = 0.6139

Class D:

nucleus (p = 0.78)

 AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT2G14210

Experimental

two hybrid

FSW = 0.2963

Unknown

 AGL44 (AGAMOUS-LIKE 44) DNA BINDING / TRANSCRIPTION FACTOR
AT5G62165

Experimental

two hybrid

FSW = 0.3932

Unknown

 AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR
AT2G22540

Predicted

Gene fusion method

Co-expression

FSW = 0.4816

Unknown

 SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT2G03430

Predicted

Gene fusion method

FSW = 0.0322

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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