Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57350 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN transport LOCATED IN nuclear pore CONTAINS InterPro DOMAIN/s Nucleoporin interacting component Nup93/Nic96 (InterProIPR007231) BEST Arabidopsis thaliana protein match is nucleoporin interacting component family protein (TAIRAT2G416201) Has 234 Blast hits to 230 proteins in 99 species Archae - 0 Bacteria - 3 Metazoa - 124 Fungi - 76 Plants - 29 Viruses - 0 Other Eukaryotes - 2 (source NCBI BLink) )

14 Proteins interacs with AT3G57350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G07698

Predicted

two hybrid

two hybrid

FSW = 0.0362

Unknown

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT2G30970

Predicted

two hybrid

two hybrid

FSW = 0.0362

Unknown

ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT1G22840

Predicted

two hybrid

FSW = 0.0741

Unknown

CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT4G33650

Predicted

two hybrid

FSW = 0.0196

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G62810

Predicted

two hybrid

FSW = 0.0618

Unknown

PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G14120

Predicted

two hybrid

FSW = 0.0230

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT4G10040

Predicted

two hybrid

FSW = 0.0488

Unknown

CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT4G34370

Predicted

two hybrid

FSW = 0.0241

Unknown

ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING
AT5G20490

Predicted

two hybrid

FSW = 0.1170

Unknown

XIK MOTOR/ PROTEIN BINDING
AT5G27030

Predicted

two hybrid

FSW = 0.0395

Unknown

TPR3 (TOPLESS-RELATED 3)
AT3G14890

Predicted

Affinity Capture-MS

FSW = 0.0724

Unknown

PHOSPHOESTERASE
AT4G33200

Predicted

two hybrid

FSW = 0.0625

Unknown

XI-I MOTOR/ PROTEIN BINDING
AT1G78580

Predicted

two hybrid

FSW = 0.0304

Unknown

ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G13224

Predicted

two hybrid

FSW = 0.0428

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454