Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57550 - ( AGK2 (GUANYLATE KINASE) guanylate kinase )
40 Proteins interacs with AT3G57550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.1910
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT5G27540 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | MIRO1 (MIRO-RELATED GTP-ASE 1) GTP BINDING |
AT3G08950 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.2451
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0100
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.2076
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.1121
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1015
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G71860 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0294
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G61430 | PredictedAffinity Capture-Western | FSW = 0.0826
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G52600 | PredictedReconstituted ComplexAffinity Capture-MS | FSW = 0.0372
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1771
| Unknown | ZINC ION BINDING |
AT5G19330 | PredictedPhenotypic Enhancementin vitro | FSW = 0.0502
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1005
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT5G11210 | PredictedReconstituted Complexin vitroin vitroin vivoin vivoin vitroin vitroin vivoin vivoin vitroin vivoReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0824
| Unknown | ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL |
AT5G03730 | Predictedin vivoin vitroin vivo | FSW = 0.0162
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.1957
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.2115
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.1749
| Unknown | PSF2 |
AT5G15770 | Predictedtwo hybrid | FSW = 0.0103
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT4G31200 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G61780 | Predictedtwo hybridtwo hybridin vitroin vivoin vivoin vitro | FSW = 0.0620
| Unknown | POSTSYNAPTIC PROTEIN-RELATED |
AT2G26210 | Predictedin vivotwo hybrid | FSW = 0.0315
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G44050 | Predictedin vivoin vitro | FSW = 0.0372
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT4G15930 | Predictedtwo hybridin vivoin vitro | FSW = 0.0109
| Unknown | MICROTUBULE MOTOR |
AT5G19360 | PredictedAffinity Capture-Westernbiochemical | FSW = 0.0083
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G57610 | Predictedin vitro | FSW = 0.0711
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G53010 | Predictedin vitroin vivotwo hybrid | FSW = 0.0239
| Unknown | CALCIUM-TRANSPORTING ATPASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.2164
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1328
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.1464
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0836
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.1743
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MS | FSW = 0.0962
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.1797
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0890
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.1756
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT2G41880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0239
| Unknown | GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454