Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57660 - ( NRPA1 DNA binding / DNA-directed RNA polymerase/ zinc ion binding )
41 Proteins interacs with AT3G57660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G21350 | Experimental | FSW = 0.0702
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT3G01610 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0409
| Class C:nucleus | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G11964 | PredictedCo-purificationCo-expression | FSW = 0.0261
| Class C:nucleus | RNA BINDING |
AT4G25630 | PredictedCo-purificationCo-expression | FSW = 0.0274
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G25940 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.3512
| Class C:nucleus | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT3G13940 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2541
| Class C:nucleus | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0461
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT5G57120 | Predictedin vivoin vitro | FSW = 0.0211
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN NUCLEOLUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF (INTERPROIPR006594) SRP40 C-TERMINAL (INTERPROIPR007718) HAS 90949 BLAST HITS TO 45608 PROTEINS IN 1620 SPECIES ARCHAE - 300 BACTERIA - 8281 METAZOA - 37603 FUNGI - 8095 PLANTS - 3374 VIRUSES - 548 OTHER EUKARYOTES - 32748 (SOURCE NCBI BLINK) |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0887
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT4G25340 | PredictedCo-purification | FSW = 0.0322
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0870
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0088
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0103
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G50690 | Predictedin vitro | FSW = 0.0455
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0048
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G20570 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0138
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2540
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT3G42830 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0117
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1185
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G19190 | Predictedtwo hybridtwo hybrid | FSW = 0.0107
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT2G34750 | Predictedin vivoin vitroAffinity Capture-WesternCo-expression | FSW = 0.0370
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G39240 | Predictedin vivoin vitro | FSW = 0.0615
| Unknown | RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING |
AT1G09020 | PredictedPhenotypic Enhancement | FSW = 0.0313
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G20610 | PredictedPhenotypic Enhancement | FSW = 0.0154
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G29940 | PredictedSynthetic RescueSynthetic RescueAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.3267
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G54250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.3269
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G60620 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1964
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0177
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G22320 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1818
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G46960 | PredictedPhenotypic Enhancement | FSW = 0.0331
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G18860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0290
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G41010 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1748
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940 | Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.2414
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G02310 | PredictedPhenotypic Suppression | FSW = 0.0140
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
AT5G15400 | PredictedPhenotypic Enhancement | FSW = 0.0296
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G11475 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2124
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G04630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingEnriched domain pairCo-expression | FSW = 0.2602
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G12340 | PredictedCo-purificationCo-expression | FSW = 0.0663
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454