Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G57660 - ( NRPA1 DNA binding / DNA-directed RNA polymerase/ zinc ion binding )

41 Proteins interacs with AT3G57660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G21350

Experimental

FSW = 0.0702

Unknown

RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT3G01610

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0409

Class C:

nucleus

CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G11964Predicted

Co-purification

Co-expression

FSW = 0.0261

Class C:

nucleus

RNA BINDING
AT4G25630

Predicted

Co-purification

Co-expression

FSW = 0.0274

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT3G25940

Predicted

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.3512

Class C:

nucleus

TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN
AT3G13940

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2541

Class C:

nucleus

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G62310

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0461

Class C:

nucleus

RNA HELICASE PUTATIVE
AT5G57120

Predicted

in vivo

in vitro

FSW = 0.0211

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN NUCLEOLUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF (INTERPROIPR006594) SRP40 C-TERMINAL (INTERPROIPR007718) HAS 90949 BLAST HITS TO 45608 PROTEINS IN 1620 SPECIES ARCHAE - 300 BACTERIA - 8281 METAZOA - 37603 FUNGI - 8095 PLANTS - 3374 VIRUSES - 548 OTHER EUKARYOTES - 32748 (SOURCE NCBI BLINK)
AT4G08350

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0887

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT4G25340

Predicted

Co-purification

FSW = 0.0322

Class C:

nucleus

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0870

Class C:

nucleus

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0088

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0103

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT3G50690

Predicted

in vitro

FSW = 0.0455

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0048

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G20570

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0138

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G61700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2540

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT3G42830

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT4G26840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0117

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G29540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1185

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G19190

Predicted

two hybrid

two hybrid

FSW = 0.0107

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT2G34750

Predicted

in vivo

in vitro

Affinity Capture-Western

Co-expression

FSW = 0.0370

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G39240

Predicted

in vivo

in vitro

FSW = 0.0615

Unknown

RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING
AT1G09020

Predicted

Phenotypic Enhancement

FSW = 0.0313

Unknown

SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G20610

Predicted

Phenotypic Enhancement

FSW = 0.0154

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G29940Predicted

Synthetic Rescue

Synthetic Rescue

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.3267

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G54250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

FSW = 0.3269

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G60620

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1964

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0177

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G22320

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1818

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G46960Predicted

Phenotypic Enhancement

FSW = 0.0331

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G18860

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0290

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G41010

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1748

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G51940

Predicted

interologs mapping

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2414

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G02310

Predicted

Phenotypic Suppression

FSW = 0.0140

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G15400

Predicted

Phenotypic Enhancement

FSW = 0.0296

Unknown

U-BOX DOMAIN-CONTAINING PROTEIN
AT2G29400

Predicted

Affinity Capture-MS

FSW = 0.0191

Unknown

TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G11475

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2124

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G04630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.2602

Unknown

NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G12340

Predicted

Co-purification

Co-expression

FSW = 0.0663

Unknown

FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454