Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58040 - ( SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) protein binding / ubiquitin-protein ligase/ zinc ion binding )
25 Proteins interacs with AT3G58040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0039
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G14230 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.1429
| Unknown | RAP22 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G33120 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90B) |
AT5G02370 | Predictedtwo hybridCo-expression | FSW = 0.0952
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G10540 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | PEPTIDASE M3 FAMILY PROTEIN / THIMET OLIGOPEPTIDASE FAMILY PROTEIN |
AT5G52640 | PredictedPhenotypic Enhancement | FSW = 0.0017
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G64740 | PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.0301
| Unknown | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G15680 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0173
| Unknown | BINDING |
AT1G30070 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.2370
| Unknown | SGS DOMAIN-CONTAINING PROTEIN |
AT3G56990 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT5G60980 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G03730 | PredictedPhenotypic Suppression | FSW = 0.0143
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G02090 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT1G66070 | Predictedin vivo | FSW = 0.0440
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT3G57870 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G67320 | Predictedin vivo | FSW = 0.0288
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G42190 | Predictedin vivoAffinity Capture-MS | FSW = 0.0173
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedAffinity Capture-MSin vitro | FSW = 0.0218
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT1G63660 | PredictedPhenotypic Enhancement | FSW = 0.0094
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G24190 | PredictedPhenotypic Enhancement | FSW = 0.0477
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
AT3G20640 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | ETHYLENE-RESPONSIVE PROTEIN -RELATED |
AT1G59580 | PredictedPhenotypic Enhancement | FSW = 0.0063
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT5G56150 | PredictedPhenotypic Suppression | FSW = 0.0264
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT5G23550 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SFT2-LIKE (INTERPROIPR011691) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G241701) HAS 455 BLAST HITS TO 455 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 195 FUNGI - 96 PLANTS - 62 VIRUSES - 0 OTHER EUKARYOTES - 102 (SOURCE NCBI BLINK) |
AT2G41980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0517
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454