Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58610 - ( ketol-acid reductoisomerase )
44 Proteins interacs with AT3G58610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G54770 | PredictedPhenotypic Enhancement | FSW = 0.1372
| Class C:plastidmitochondrion | THI1 PROTEIN HOMODIMERIZATION |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1749
| Class C:plastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G09660 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.2437
| Class C:plastid | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT5G19830 | PredictedPhenotypic Enhancement | FSW = 0.1050
| Class C:plastid | AMINOACYL-TRNA HYDROLASE |
AT3G10050 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:plastid | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT1G04750 | PredictedSynthetic Lethality | FSW = 0.1926
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G45850 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0536
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G21700 | Predictedtwo hybridPhenotypic Enhancementsynthetic growth defectsynthetic growth defectAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueReconstituted Complexco-fractionationCo-fractionationsynthetic growth defectSynthetic RescuePhenotypic SuppressionPhenotypic Enhancementinterologs mapping | FSW = 0.3084
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.0983
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1108
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G05170 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1208
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G05180 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2037
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT2G41880 | Predictedpull down | FSW = 0.0284
| Unknown | GK-1 (GUANYLATE KINASE 1) GUANYLATE KINASE |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G44180 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2238
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G47830 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1980
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G66590 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2322
| Unknown | COX19 FAMILY PROTEIN |
AT3G03900 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0378
| Unknown | ADENYLYLSULFATE KINASE PUTATIVE |
AT1G04130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0155
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G07830 | Predictedsynthetic growth defect | FSW = 0.0259
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G80500 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0665
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.1869
| Unknown | UNKNOWN PROTEIN |
AT3G45240 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2647
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G47610 | PredictedSynthetic Lethality | FSW = 0.2178
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0852
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0755
| Unknown | UNKNOWN PROTEIN |
AT4G27130 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2426
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G34370 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1304
| Unknown | ARI1 (ARIADNE) PROTEIN BINDING / ZINC ION BINDING |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G08160 | PredictedSynthetic Lethality | FSW = 0.1142
| Unknown | ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G11500 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1774
| Unknown | UNKNOWN PROTEIN |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.2302
| Unknown | UNKNOWN PROTEIN |
AT5G17860 | PredictedPhenotypic Enhancement | FSW = 0.3042
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G38890 | PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | EXORIBONUCLEASE-RELATED |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.2191
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.1281
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2646
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.2104
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.1660
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0686
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G26970 | Predictedinteraction prediction | FSW = 0.0189
| Unknown | EXONUCLEASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454