Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58830 - ( haloacid dehalogenase (HAD) superfamily protein )
23 Proteins interacs with AT3G58830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G37270 | PredictedPhenotypic Enhancement | FSW = 0.0044
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0163
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT4G35630 | Predictedsynthetic growth defect | FSW = 0.0368
| Unknown | PSAT O-PHOSPHO-L-SERINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G22300 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G58430 | Predictedsynthetic growth defect | FSW = 0.0381
| Unknown | ATEXO70B1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1) PROTEIN BINDING |
AT5G16820 | Predictedsynthetic growth defect | FSW = 0.0140
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64630 | Predictedsynthetic growth defect | FSW = 0.0096
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G51300 | Predictedsynthetic growth defect | FSW = 0.0106
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT1G31170 | Predictedsynthetic growth defect | FSW = 0.0063
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT2G19720 | Predictedsynthetic growth defect | FSW = 0.0410
| Unknown | RPS15AB (RIBOSOMAL PROTEIN S15A B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G06470 | Predictedsynthetic growth defect | FSW = 0.0062
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G14390 | Predictedsynthetic growth defect | FSW = 0.0994
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0152
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0081
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G39840 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G44530 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0074
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT3G62940 | Predictedsynthetic growth defect | FSW = 0.0334
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
AT4G22756 | Predictedsynthetic growth defect | FSW = 0.0176
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT4G24160 | Predictedsynthetic growth defect | FSW = 0.0134
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G37680 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
AT5G04420 | Predictedsynthetic growth defect | FSW = 0.0220
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT2G29400 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454