Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59020 - ( binding / protein transporter )
28 Proteins interacs with AT3G59020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19320 | Predictedin vitro | FSW = 0.0497
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G47520 | Predictedinterologs mapping | FSW = 0.0149
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT5G20020 | Predictedin vitro | FSW = 0.0420
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G53480 | Predictedin vitroin vitro | FSW = 0.0375
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT1G71860 | PredictedAffinity Capture-Western | FSW = 0.0266
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G16130 | Predictedin vitro | FSW = 0.0304
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT5G39740 | Predictedin vitro | FSW = 0.0114
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | ARAC10 GTP BINDING |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G31660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0754
| Unknown | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0414
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G60510 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G48160 | Predictedin vitro | FSW = 0.0646
| Unknown | SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN PUTATIVE / SRP19 PUTATIVE |
AT3G54170 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING |
AT4G11330 | PredictedPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0115
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT3G23090 | Predictedin vitro | FSW = 0.1125
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN INFLORESCENCE MERISTEM LEAF APEX HYPOCOTYL FLOWER ROOT EXPRESSED DURING PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S TARGETING FOR XKLP2 (INTERPROIPR009675) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS WDL1 (TAIRAT3G046303) HAS 483 BLAST HITS TO 450 PROTEINS IN 87 SPECIES ARCHAE - 2 BACTERIA - 15 METAZOA - 188 FUNGI - 17 PLANTS - 148 VIRUSES - 0 OTHER EUKARYOTES - 113 (SOURCE NCBI BLINK) |
AT3G55280 | Predictedin vitro | FSW = 0.0095
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0194
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G66590 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | COX19 FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G23290 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454