Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59220 - ( PRN (PIRIN) calmodulin binding )

10 Proteins interacs with AT3G59220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78300

Experimental

FSW = 0.0084

Class D:

cytosol (p = 0.67)

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G61900

Experimental

FSW = 0.1170

Class D:

cytosol (p = 0.67)

BON1 (BONZAI 1) CALCIUM-DEPENDENT PHOSPHOLIPID BINDING
AT2G26300

Experimental

pull down

Reconstituted Complex

two hybrid

in vitro

FSW = 0.0196

Class D:

cytosol (p = 0.67)

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT5G47670

Experimental

pull down

FSW = 0.0697

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

NF-YB6 (NUCLEAR FACTOR Y SUBUNIT B6) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT1G09030

Experimental

pull down

FSW = 0.1641

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

NF-YB4 (NUCLEAR FACTOR Y SUBUNIT B4) TRANSCRIPTION FACTOR
AT2G05210

Experimental

FSW = 0.0556

Unknown

ATPOT1A (PROTECTION OF TELOMERES 1A) TELOMERIC DNA BINDING
AT3G61190

Experimental

FSW = 0.1015

Unknown

BAP1 (BON ASSOCIATION PROTEIN 1) PHOSPHOLIPID BINDING / PROTEIN BINDING
AT2G43120

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1625

Unknown

PIRIN PUTATIVE
AT1G50590

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1625

Unknown

PIRIN PUTATIVE
AT3G59260

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3980

Unknown

PIRIN PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454