Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59290 - ( epsin N-terminal homology (ENTH) domain-containing protein )

9 Proteins interacs with AT3G59290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G37270

Predicted

Synthetic Lethality

FSW = 0.0266

Unknown

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G47370

Predicted

Synthetic Rescue

FSW = 0.0268

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT2G14580

Predicted

Synthetic Lethality

FSW = 0.0495

Unknown

ATPRB1
AT4G33730

Predicted

interologs mapping

synthetic growth defect

interologs mapping

FSW = 0.1227

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G01070

Predicted

interologs mapping

interologs mapping

interologs mapping

interologs mapping

biochemical

interologs mapping

Phenotypic Enhancement

FSW = 0.1296

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT1G59580

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0246

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT2G14880

Predicted

Phenotypic Enhancement

FSW = 0.0473

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G25585

Predicted

interologs mapping

FSW = 0.0803

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G29060

Predicted

two hybrid

FSW = 0.0664

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454