Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59500 - ( integral membrane HRF1 family protein )

19 Proteins interacs with AT3G59500
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02130

Predicted

two hybrid

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.1312

Class C:

endoplasmic reticulum

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT5G45130

Predicted

two hybrid

FSW = 0.1152

Class C:

endoplasmic reticulum

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G54840

Predicted

interaction prediction

FSW = 0.0631

Class C:

endoplasmic reticulum

ARA6 GTP BINDING / GTPASE
AT2G44610

Predicted

interaction prediction

FSW = 0.1212

Unknown

RAB6A GTP BINDING / PROTEIN BINDING
AT1G16920

Predicted

two hybrid

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.1470

Unknown

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT1G55190

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.3604

Unknown

PRA7
AT1G79590

Predicted

two hybrid

two hybrid

interaction prediction

FSW = 0.1423

Unknown

SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR
AT3G16100

Predicted

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.2078

Unknown

ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G09900

Predicted

two hybrid

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.0896

Unknown

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT4G18430

Predicted

Reconstituted Complex

two hybrid

FSW = 0.1802

Unknown

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT3G24350

Predicted

Co-purification

FSW = 0.1604

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G13550

Predicted

two hybrid

FSW = 0.0162

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G24960

Predicted

interaction prediction

FSW = 0.0426

Unknown

ATHVA22D
AT2G36300

Predicted

interaction prediction

two hybrid

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

two hybrid

two hybrid

two hybrid

Reconstituted Complex

interologs mapping

interologs mapping

FSW = 0.2559

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT3G52760

Predicted

two hybrid

FSW = 0.1039

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT4G17486

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

UNKNOWN PROTEIN
AT5G47310

Predicted

two hybrid

FSW = 0.0368

Unknown

UNKNOWN PROTEIN
AT3G06483

Predicted

biochemical

FSW = 0.0152

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT5G10260

Predicted

Reconstituted Complex

FSW = 0.0935

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454