Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59760 - ( OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP binding / cysteine synthase )

24 Proteins interacs with AT3G59760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G13110

Experimental

pull down

FSW = 0.0298

Class A:

mitochondrion

Class B:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ATSERAT22 (SERINE ACETYLTRANSFERASE 22) SERINE O-ACETYLTRANSFERASE
AT1G78300

Experimental

FSW = 0.0087

Class B:

vacuole

plastid

plasma membrane

peroxisome

nucleus

mitochondrion

cytosol

cytoskeleton

GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G56760

Experimental

Affinity Capture-MS

two hybrid

affinity technology

FSW = 0.0704

Class B:

plastid

mitochondrion

cytosol

ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE
AT4G17380

Experimental

confocal microscopy

FSW = 0.0234

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT5G09590

Predicted

interaction prediction

FSW = 0.0026

Class C:

plastid

mitochondrion

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G13490

Predicted

pull down

FSW = 0.0152

Class C:

plastid

mitochondrion

OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G43750

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.1856

Class C:

plastid

mitochondrion

OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE
AT5G64050

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.1298

Class C:

plastid

mitochondrion

ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE
AT1G78900

Predicted

interaction prediction

FSW = 0.0329

Class C:

plastid

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G10670

Predicted

pull down

FSW = 0.0494

Class C:

plastid

ATNAP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTEIN BINDING / TRANSPORTER
AT5G51100

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0315

Class C:

plastid

FSD2 (FE SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT5G57015

Predicted

interaction prediction

FSW = 0.0061

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G54840

Predicted

interaction prediction

FSW = 0.0117

Unknown

SGP1 GTP BINDING
AT3G06720

Predicted

interaction prediction

FSW = 0.0046

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G34720

Predicted

interaction prediction

FSW = 0.0180

Unknown

NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR
AT1G07370

Predicted

interaction prediction

FSW = 0.0168

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT4G35640

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0258

Unknown

ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE
AT1G25350

Predicted

pull down

FSW = 0.0395

Unknown

OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE
AT2G20060

Predicted

pull down

FSW = 0.0159

Unknown

RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT4G26750

Predicted

two hybrid

FSW = 0.0219

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G03820

Predicted

interaction prediction

FSW = 0.0470

Unknown

NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT3G58560

Predicted

interaction prediction

FSW = 0.0157

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G25550

Predicted

Gene fusion method

FSW = 0.0593

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT3G26100

Predicted

Gene fusion method

FSW = 0.0296

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454