Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59760 - ( OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP binding / cysteine synthase )
24 Proteins interacs with AT3G59760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13110 | Experimentalpull down | FSW = 0.0298
| Class A:mitochondrionClass B:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATSERAT22 (SERINE ACETYLTRANSFERASE 22) SERINE O-ACETYLTRANSFERASE |
AT1G78300 | Experimental | FSW = 0.0087
| Class B:vacuoleplastidplasma membraneperoxisomenucleusmitochondrioncytosolcytoskeleton | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G56760 | ExperimentalAffinity Capture-MStwo hybridaffinity technology | FSW = 0.0704
| Class B:plastidmitochondrioncytosol | ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE |
AT4G17380 | Experimentalconfocal microscopy | FSW = 0.0234
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G09590 | Predictedinteraction prediction | FSW = 0.0026
| Class C:plastidmitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G13490 | Predictedpull down | FSW = 0.0152
| Class C:plastidmitochondrion | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G43750 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1856
| Class C:plastidmitochondrion | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT5G64050 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.1298
| Class C:plastidmitochondrion | ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE |
AT1G78900 | Predictedinteraction prediction | FSW = 0.0329
| Class C:plastid | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G10670 | Predictedpull down | FSW = 0.0494
| Class C:plastid | ATNAP7 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTEIN BINDING / TRANSPORTER |
AT5G51100 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0315
| Class C:plastid | FSD2 (FE SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT5G57015 | Predictedinteraction prediction | FSW = 0.0061
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0117
| Unknown | SGP1 GTP BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0046
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G34720 | Predictedinteraction prediction | FSW = 0.0180
| Unknown | NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
AT1G07370 | Predictedinteraction prediction | FSW = 0.0168
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT4G35640 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0258
| Unknown | ATSERAT32 (SERINE ACETYLTRANSFERASE 32) ACETYLTRANSFERASE/ SERINE O-ACETYLTRANSFERASE |
AT1G25350 | Predictedpull down | FSW = 0.0395
| Unknown | OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE |
AT2G20060 | Predictedpull down | FSW = 0.0159
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT4G26750 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT2G03820 | Predictedinteraction prediction | FSW = 0.0470
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT3G58560 | Predictedinteraction prediction | FSW = 0.0157
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G25550 | PredictedGene fusion method | FSW = 0.0593
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT3G26100 | PredictedGene fusion method | FSW = 0.0296
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454