Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G59790 - ( ATMPK10 MAP kinase/ kinase )
52 Proteins interacs with AT3G59790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G29810 | Experimentalprotein kinase assay | FSW = 0.0777
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
AT1G73500 | Experimentalprotein kinase assay | FSW = 0.0966
| Unknown | MKK9 (MAP KINASE KINASE 9) MAP KINASE KINASE/ KINASE/ PROTEIN KINASE ACTIVATOR |
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0792
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G63400 | Predictedbiochemical | FSW = 0.0195
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT2G36530 | Predictedbiochemical | FSW = 0.0354
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G26590 | Predictedbiochemical | FSW = 0.0254
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G01370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1279
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0772
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G29690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1587
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT5G06290 | Predictedbiochemical | FSW = 0.0117
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0922
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G11250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0749
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G23900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0879
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G06390 | PredictedPhylogenetic profile method | FSW = 0.2294
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT4G18710 | PredictedPhylogenetic profile method | FSW = 0.3079
| Unknown | BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0145
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18040 | PredictedPhylogenetic profile method | FSW = 0.0945
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT2G40290 | Predictedinterologs mapping | FSW = 0.0447
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G09060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2116
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT3G45280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2224
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G05170 | PredictedAffinity Capture-Western | FSW = 0.0065
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G43460 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G80460 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0484
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1716
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G38600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1644
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT1G43080 | Predictedinterologs mapping | FSW = 0.0207
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT2G04660 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0134
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G34555 | Predictedbiochemical | FSW = 0.0162
| Unknown | 40S RIBOSOMAL PROTEIN S25 PUTATIVE |
AT5G05420 | PredictedAffinity Capture-MS | FSW = 0.0842
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G66360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1716
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT5G66640 | Predictedbiochemical | FSW = 0.0117
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G43790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1757
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G10210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1613
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT4G36450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3893
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT2G18170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3309
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT3G45640 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3451
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G46070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2089
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT1G59580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1874
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT1G07880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2232
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.3163
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.2208
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G02510 | PredictedGene fusion method | FSW = 0.0432
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454