Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60010 - ( ASK13 (ARABIDOPSIS SKP1-LIKE 13) protein binding / ubiquitin-protein ligase )
40 Proteins interacs with AT3G60010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G33430 | Experimental | FSW = 0.2090
| Unknown | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
AT3G04460 | Experimental | FSW = 0.0557
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT4G08920 | Experimentalprotein kinase assay | FSW = 0.0413
| Unknown | CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE |
AT2G18915 | Experimental | FSW = 0.1867
| Unknown | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02440 | Experimentaltwo hybridfluorescence acceptor donor pair | FSW = 0.3353
| Unknown | EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE |
AT1G67340 | Experimental | FSW = 0.2553
| Unknown | ZINC FINGER (MYND TYPE) FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
AT1G30950 | Experimental | FSW = 0.3564
| Unknown | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G25490 | Experimental | FSW = 0.0933
| Unknown | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G02570 | Experimentaltwo hybrid | FSW = 0.1997
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT4G39550 | Experimentaltwo hybrid | FSW = 0.0429
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT1G68050 | Experimentaltwo hybrid | FSW = 0.2314
| Unknown | FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE |
AT3G61590 | Experimentaltwo hybrid | FSW = 0.3723
| Unknown | HWS (HAWAIIAN SKIRT) UBIQUITIN-PROTEIN LIGASE |
AT5G49610 | Experimentaltwo hybrid | FSW = 0.2310
| Unknown | F-BOX FAMILY PROTEIN |
AT1G06110 | Experimental | FSW = 0.1439
| Unknown | SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) PROTEIN BINDING |
AT2G01620 | Experimental | FSW = 0.3565
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
AT1G78100 | Experimental | FSW = 0.2174
| Unknown | F-BOX FAMILY PROTEIN |
AT1G55000 | Experimentalpull down | FSW = 0.2553
| Unknown | PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN |
AT1G76920 | Experimental | FSW = 0.0843
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT4G38940 | Experimental | FSW = 0.2357
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT3G61060 | Experimental | FSW = 0.1494
| Unknown | ATPP2-A13 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A13) CARBOHYDRATE BINDING |
AT4G24210 | Experimental | FSW = 0.2488
| Unknown | SLY1 (SLEEPY1) |
AT5G48170 | Experimental | FSW = 0.1859
| Unknown | SLY2 (SLEEPY2) |
AT3G54650 | Experimental | FSW = 0.1915
| Unknown | FBL17 UBIQUITIN-PROTEIN LIGASE |
AT4G12560 | Experimentaltwo hybrid | FSW = 0.4347
| Unknown | F-BOX FAMILY PROTEIN |
AT1G75950 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4559
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G20140 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4586
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60020 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6017
| Unknown | ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G25650 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6617
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03170 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7509
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6397
| Unknown | ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21830 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5695
| Unknown | ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3220
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03160 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4728
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G20160 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.6557
| Unknown | MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21860 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6557
| Unknown | ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21850 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6483
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G10230 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.7615
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34470 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.6483
| Unknown | ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34210 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.8124
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G25700 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.6531
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454