Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60010 - ( ASK13 (ARABIDOPSIS SKP1-LIKE 13) protein binding / ubiquitin-protein ligase )

40 Proteins interacs with AT3G60010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G33430

Experimental

FSW = 0.2090

Unknown

BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE
AT3G04460

Experimental

FSW = 0.0557

Unknown

PEX12 PROTEIN BINDING / ZINC ION BINDING
AT4G08920

Experimental

protein kinase assay

FSW = 0.0413

Unknown

CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE
AT2G18915

Experimental

FSW = 0.1867

Unknown

LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G02440

Experimental

two hybrid

fluorescence acceptor donor pair

FSW = 0.3353

Unknown

EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE
AT1G67340

Experimental

FSW = 0.2553

Unknown

ZINC FINGER (MYND TYPE) FAMILY PROTEIN / F-BOX FAMILY PROTEIN
AT1G30950

Experimental

FSW = 0.3564

Unknown

UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25490

Experimental

FSW = 0.0933

Unknown

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G02570

Experimental

two hybrid

FSW = 0.1997

Unknown

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT4G39550

Experimental

two hybrid

FSW = 0.0429

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT1G68050

Experimental

two hybrid

FSW = 0.2314

Unknown

FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE
AT3G61590

Experimental

two hybrid

FSW = 0.3723

Unknown

HWS (HAWAIIAN SKIRT) UBIQUITIN-PROTEIN LIGASE
AT5G49610

Experimental

two hybrid

FSW = 0.2310

Unknown

F-BOX FAMILY PROTEIN
AT1G06110

Experimental

FSW = 0.1439

Unknown

SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) PROTEIN BINDING
AT2G01620

Experimental

FSW = 0.3565

Unknown

MEE11 (MATERNAL EFFECT EMBRYO ARREST 11)
AT1G78100

Experimental

FSW = 0.2174

Unknown

F-BOX FAMILY PROTEIN
AT1G55000

Experimental

pull down

FSW = 0.2553

Unknown

PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN
AT1G76920

Experimental

FSW = 0.0843

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT4G38940

Experimental

FSW = 0.2357

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT3G61060

Experimental

FSW = 0.1494

Unknown

ATPP2-A13 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A13) CARBOHYDRATE BINDING
AT4G24210

Experimental

FSW = 0.2488

Unknown

SLY1 (SLEEPY1)
AT5G48170

Experimental

FSW = 0.1859

Unknown

SLY2 (SLEEPY2)
AT3G54650

Experimental

FSW = 0.1915

Unknown

FBL17 UBIQUITIN-PROTEIN LIGASE
AT4G12560

Experimental

two hybrid

FSW = 0.4347

Unknown

F-BOX FAMILY PROTEIN
AT1G75950

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4559

Unknown

SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G20140

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.4586

Unknown

ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G60020

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6017

Unknown

ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G25650

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6617

Unknown

ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03170

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7509

Unknown

ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6397

Unknown

ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21830

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5695

Unknown

ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3220

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G03160

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4728

Unknown

ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G20160

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.6557

Unknown

MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21860

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6557

Unknown

ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G21850

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6483

Unknown

ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G10230

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.7615

Unknown

ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34470

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.6483

Unknown

ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G34210

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.8124

Unknown

ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G25700

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.6531

Unknown

ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454