Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60180 - ( uridylate kinase putative / uridine monophosphate kinase putative / UMP kinase putative )
41 Proteins interacs with AT3G60180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G47620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1562
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3333
| Class C:nucleus | HIS4 DNA BINDING |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2389
| Class C:cytosol | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G50370 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.0818
| Unknown | ADENYLATE KINASE PUTATIVE |
AT5G63400 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0403
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.1451
| Unknown | HISTONE H4 |
AT4G16660 | PredictedSynthetic Lethality | FSW = 0.2133
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT5G10350 | PredictedAffinity Capture-MSCo-crystal StructureAffinity Capture-MSAffinity Capture-MSCo-crystal StructureAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.2241
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G45300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2171
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G20920 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | TRANSLOCATION PROTEIN-RELATED |
AT4G25740 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.4106
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0534
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G26340 | Predictedtwo hybridSynthetic Lethality | FSW = 0.0583
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G65040 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G47630 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0578
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT4G07820 | Predictedsynthetic growth defect | FSW = 0.0267
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G17810 | PredictedPhenotypic Enhancement | FSW = 0.0423
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT4G39200 | PredictedSynthetic Lethality | FSW = 0.1376
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G29540 | PredictedSynthetic Lethality | FSW = 0.0952
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G16420 | PredictedAffinity Capture-MS | FSW = 0.1687
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G02100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.2523
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G13580 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1940
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MSinterologs mapping | FSW = 0.0252
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G72680 | Predictedtwo hybrid | FSW = 0.0800
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT2G33560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationCo-crystal Structure | FSW = 0.2353
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G34750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2917
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationsynthetic growth defect | FSW = 0.4000
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT2G37420 | Predictedsynthetic growth defect | FSW = 0.1273
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT3G09640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2979
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G09700 | PredictedPhenotypic Enhancement | FSW = 0.1250
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G20693 | PredictedSynthetic Lethality | FSW = 0.0983
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0961
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0910
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G62760 | PredictedSynthetic Rescue | FSW = 0.1134
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G14370 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | PHOSPHOINOSITIDE BINDING |
AT4G35520 | PredictedSynthetic Lethality | FSW = 0.0591
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT5G01670 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G14180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2389
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G59440 | Predictedinterologs mapping | FSW = 0.0612
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT5G26667 | PredictedPhylogenetic profile method | FSW = 0.1875
| Unknown | PYR6 CYTIDYLATE KINASE/ URIDYLATE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454