Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60250 - ( CKB3 protein kinase regulator/ transcription factor binding )

4 Proteins interacs with AT3G60250
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G46830

Experimental

in vitro

two hybrid

Reconstituted Complex

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protein kinase assay

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two hybrid

Reconstituted Complex

FSW = 0.3607

Unknown

CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT1G01060

Experimental

pull down

Reconstituted Complex

in vitro

FSW = 0.3037

Unknown

LHY (LATE ELONGATED HYPOCOTYL) DNA BINDING / TRANSCRIPTION FACTOR
AT5G67380

Experimental

protein kinase assay

FSW = 0.0637

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT2G44680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0366

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

DNA

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454