Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60510 - ( enoyl-CoA hydratase/isomerase family protein )
19 Proteins interacs with AT3G60510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G20000 | PredictedAffinity Capture-MS | FSW = 0.0291
| Class C:mitochondrion | TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL |
AT4G31810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5714
| Class C:mitochondrion | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT1G70490 | Predictedsynthetic growth defect | FSW = 0.0678
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G65940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2949
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT1G29260 | PredictedGene fusion method | FSW = 0.0889
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT1G29150 | PredictedPhenotypic Enhancementsynthetic growth defectAffinity Capture-MSPhenotypic Enhancementsynthetic growth defectSynthetic Lethalityinterologs mapping | FSW = 0.0548
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT3G06470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Westernbiochemical | FSW = 0.0533
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridReconstituted ComplexCo-crystal Structure | FSW = 0.0436
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G59020 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT4G14240 | Predictedbiochemical | FSW = 0.0189
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G66640 | Predictedbiochemical | FSW = 0.0077
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G30650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2286
| Unknown | CATALYTIC |
AT1G06550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3020
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G24360 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4043
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT4G13360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5714
| Unknown | CATALYTIC |
AT2G30660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3516
| Unknown | 3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE |
AT3G49660 | PredictedGene fusion method | FSW = 0.0214
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454