Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60510 - ( enoyl-CoA hydratase/isomerase family protein )

19 Proteins interacs with AT3G60510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G20000

Predicted

Affinity Capture-MS

FSW = 0.0291

Class C:

mitochondrion

TOM40 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ VOLTAGE-GATED ANION CHANNEL
AT4G31810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5714

Class C:

mitochondrion

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT4G01840

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT1G70490Predicted

synthetic growth defect

FSW = 0.0678

Unknown

ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G65940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2949

Unknown

CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE
AT1G29260

Predicted

Gene fusion method

FSW = 0.0889

Unknown

PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING
AT1G29150

Predicted

Phenotypic Enhancement

synthetic growth defect

Affinity Capture-MS

Phenotypic Enhancement

synthetic growth defect

Synthetic Lethality

interologs mapping

FSW = 0.0548

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT3G06470

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

biochemical

FSW = 0.0533

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G18850

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Reconstituted Complex

Co-crystal Structure

FSW = 0.0436

Unknown

LPAT5 ACYLTRANSFERASE
AT3G59020

Predicted

Affinity Capture-MS

FSW = 0.0235

Unknown

BINDING / PROTEIN TRANSPORTER
AT4G14240

Predicted

biochemical

FSW = 0.0189

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G66640

Predicted

biochemical

FSW = 0.0077

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G01390

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT2G30650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2286

Unknown

CATALYTIC
AT1G06550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3020

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT3G24360

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4043

Unknown

ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN
AT4G13360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5714

Unknown

CATALYTIC
AT2G30660

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3516

Unknown

3-HYDROXYISOBUTYRYL-COENZYME A HYDROLASE PUTATIVE / COA-THIOESTER HYDROLASE PUTATIVE
AT3G49660

Predicted

Gene fusion method

FSW = 0.0214

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454