Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60840 - ( MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) )
23 Proteins interacs with AT3G60840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01690 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1159
| Class C:vacuole | BINDING |
AT5G67270 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2000
| Class C:cytoskeleton | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0210
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0220
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.1451
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | Predictedinteraction prediction | FSW = 0.3084
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G06140 | Predictedtwo hybridtwo hybrid | FSW = 0.0220
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT1G04730 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1289
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.2044
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | PredictedPhenotypic EnhancementSynthetic Lethalityinteraction prediction | FSW = 0.1630
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT3G22480 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.1882
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | H2AXA DNA BINDING |
AT2G37420 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0202
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1540
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1348
| Unknown | NUCLEOTIDE BINDING |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.3857
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G39050 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.4057
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G23290 | Predictedinteraction predictionSynthetic Lethality | FSW = 0.1867
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | Predictedinteraction predictionSynthetic Lethality | FSW = 0.1695
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G56740 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G15930 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1212
| Unknown | MICROTUBULE MOTOR |
AT5G54670 | Predictedinteraction prediction | FSW = 0.3333
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454