Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60840 - ( MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) )

23 Proteins interacs with AT3G60840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01690

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1159

Class C:

vacuole

BINDING
AT5G67270

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.2000

Class C:

cytoskeleton

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G48750

Predicted

biochemical

interaction prediction

FSW = 0.0210

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0220

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G25980

Predicted

Synthetic Lethality

FSW = 0.1451

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G36200

Predicted

interaction prediction

FSW = 0.3084

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT5G06140

Predicted

two hybrid

two hybrid

FSW = 0.0220

Unknown

SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT1G04730Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1289

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08780

Predicted

interaction prediction

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2044

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Enhancement

Synthetic Lethality

interaction prediction

FSW = 0.1630

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT2G40430

Predicted

Affinity Capture-MS

FSW = 0.0325

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)
AT3G22480

Predicted

interaction prediction

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1882

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G08880

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

H2AXA DNA BINDING
AT2G37420

Predicted

interologs mapping

Phenotypic Suppression

FSW = 0.0202

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G44580

Predicted

synthetic growth defect

FSW = 0.1540

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G42660

Predicted

synthetic growth defect

FSW = 0.1348

Unknown

NUCLEOTIDE BINDING
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.3857

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G39050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.4057

Unknown

KINESIN-RELATED PROTEIN (MKRP2)
AT5G23290

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.1867

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G49510

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.1695

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G56740

Predicted

Affinity Capture-MS

FSW = 0.0476

Unknown

HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G15930

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1212

Unknown

MICROTUBULE MOTOR
AT5G54670

Predicted

interaction prediction

FSW = 0.3333

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454