Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G60860 - ( guanine nucleotide exchange family protein )

74 Proteins interacs with AT3G60860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0047

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0315

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G09200

Predicted

Affinity Capture-MS

FSW = 0.0237

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G02130

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0399

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT5G27850

Predicted

Synthetic Lethality

FSW = 0.0759

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT1G16920

Predicted

interologs mapping

FSW = 0.0174

Unknown

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT4G31490

Predicted

Co-purification

FSW = 0.0220

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT2G07050

Predicted

Synthetic Lethality

FSW = 0.0109

Unknown

CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE
AT2G29990

Predicted

Affinity Capture-MS

FSW = 0.0145

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT3G07100

Predicted

Affinity Capture-Western

FSW = 0.0149

Unknown

PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE
AT5G03290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0291

Unknown

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G30580

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE
AT1G73820

Predicted

Synthetic Lethality

FSW = 0.0098

Unknown

SSU72-LIKE FAMILY PROTEIN
AT1G23740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2318

Unknown

OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN
AT5G26830

Predicted

Synthetic Lethality

FSW = 0.0386

Unknown

THREONYL-TRNA SYNTHETASE / THREONINE--TRNA LIGASE (THRRS)
AT5G58640

Predicted

Affinity Capture-MS

FSW = 0.0089

Unknown

SELENOPROTEIN-RELATED
AT4G23700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2669

Unknown

ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G63110

Predicted

Synthetic Lethality

FSW = 0.0046

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED
AT1G30230

Predicted

Synthetic Lethality

FSW = 0.0220

Unknown

ELONGATION FACTOR 1-BETA / EF-1-BETA
AT2G29140

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2283

Unknown

APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0450

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G18430

Predicted

interologs mapping

FSW = 0.0142

Unknown

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G07180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1299

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT4G28220

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2778

Unknown

NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE
AT5G04600

Predicted

Synthetic Lethality

FSW = 0.0228

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G07630

Predicted

Synthetic Lethality

FSW = 0.0289

Unknown

LIPID TRANSPORTER
AT2G40290

Predicted

Synthetic Lethality

FSW = 0.0220

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT1G07370

Predicted

Synthetic Lethality

FSW = 0.0036

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G50060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2447

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G47990

Predicted

Synthetic Lethality

FSW = 0.0200

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT2G46520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0338

Unknown

CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT5G40820

Predicted

Synthetic Lethality

FSW = 0.0251

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT3G28730

Predicted

Synthetic Lethality

FSW = 0.0090

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT2G19770

Predicted

Synthetic Lethality

FSW = 0.0165

Unknown

PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING
AT1G04160

Predicted

Synthetic Lethality

FSW = 0.0244

Unknown

XIB (MYOSIN XI B) MOTOR
AT1G15420

Predicted

Synthetic Lethality

FSW = 0.0261

Unknown

UNKNOWN PROTEIN
AT1G49490

Predicted

Synthetic Lethality

FSW = 0.0300

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN
AT1G52980

Predicted

Synthetic Lethality

FSW = 0.0419

Unknown

GTP-BINDING FAMILY PROTEIN
AT1G64550

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0342

Unknown

ATGCN3 TRANSPORTER
AT1G68310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2049

Unknown

VACUOLAR SORTING SIGNAL BINDING
AT2G03040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0084

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G13680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G18220

Predicted

Synthetic Lethality

FSW = 0.0465

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK)
AT2G31760

Predicted

Affinity Capture-MS

FSW = 0.1753

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G34980

Predicted

Synthetic Lethality

FSW = 0.0156

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0244

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G08910

Predicted

Affinity Capture-MS

FSW = 0.1655

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G22980

Predicted

Synthetic Lethality

FSW = 0.0513

Unknown

ELONGATION FACTOR TU FAMILY PROTEIN
AT3G24090

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0352

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0149

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G56120

Predicted

Synthetic Lethality

FSW = 0.0308

Unknown

MET-10+ LIKE FAMILY PROTEIN
AT1G12470

Predicted

Affinity Capture-MS

FSW = 0.0110

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G14640

Predicted

two hybrid

FSW = 0.0172

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G78770

Predicted

synthetic growth defect

FSW = 0.0129

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT3G01090

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G16840

Predicted

Affinity Capture-MS

FSW = 0.0286

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G17910

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

TRANSFERASE TRANSFERRING ACYL GROUPS
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.1279

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G09350

Predicted

synthetic growth defect

FSW = 0.0556

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G50430

Predicted

Affinity Capture-MS

FSW = 0.0352

Unknown

UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE
AT3G62120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0446

Unknown

TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN
AT3G62940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0131

Unknown

OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN
AT4G00660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G01560

Predicted

Synthetic Lethality

FSW = 0.0405

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G14160

Predicted

Co-purification

FSW = 0.0291

Unknown

TRANSPORT PROTEIN PUTATIVE
AT4G16630

Predicted

Synthetic Lethality

FSW = 0.0435

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH28)
AT4G18905

Predicted

Synthetic Lethality

FSW = 0.0188

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.0299

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G34450

Predicted

Affinity Capture-Western

FSW = 0.0349

Unknown

COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT4G37760

Predicted

Synthetic Lethality

FSW = 0.0256

Unknown

SQE3 (SQUALENE EPOXIDASE 3) SQUALENE MONOOXYGENASE
AT5G44635

Predicted

Affinity Capture-MS

FSW = 0.1631

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT5G50550

Predicted

Synthetic Lethality

FSW = 0.0289

Unknown

WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE
AT5G56510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2136

Unknown

APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING
AT1G01960

Predicted

in vivo

Phylogenetic profile method

Co-expression

FSW = 0.5153

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454