Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61420 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s Kelch related (InterProIPR013089) BSD (InterProIPR005607) BEST Arabidopsis thaliana protein match is transcription factor-related (TAIRAT1G557501) Has 247 Blast hits to 247 proteins in 115 species Archae - 1 Bacteria - 0 Metazoa - 116 Fungi - 84 Plants - 26 Viruses - 0 Other Eukaryotes - 20 (source NCBI BLink) )

9 Proteins interacs with AT3G61420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G04990

Predicted

two hybrid

FSW = 0.0417

Class C:

nucleus

SAD1/UNC-84 PROTEIN-RELATED
AT5G41370

Predicted

in vitro

in vitro

in vivo

in vivo

in vitro

in vivo

in vivo

in vitro

Co-purification

FSW = 0.1449

Class C:

nucleus

XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT1G03190

Predicted

two hybrid

in vitro

in vivo

in vivo

in vitro

two hybrid

FSW = 0.0536

Class C:

nucleus

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT4G20810

Predicted

in vitro

FSW = 0.1538

Class C:

nucleus

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT1G44900

Predicted

in vitro

FSW = 0.0216

Class C:

nucleus

ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT5G42000

Predicted

two hybrid

FSW = 0.0385

Unknown

ORMDL FAMILY PROTEIN
AT1G53780

Predicted

in vivo

in vitro

FSW = 0.0368

Unknown

ATP BINDING / ATPASE/ HYDROLASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G10070

Predicted

in vivo

in vitro

FSW = 0.1204

Unknown

KH DOMAIN-CONTAINING PROTEIN
AT5G27620

Predicted

in vitro

FSW = 0.0952

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454