Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G61530 - ( PANB2 3-methyl-2-oxobutanoate hydroxymethyltransferase )

16 Proteins interacs with AT3G61530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0133

Class C:

mitochondrion

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.0274

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT2G46110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2500

Class C:

mitochondrion

KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0084

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G20020

Predicted

Affinity Capture-MS

FSW = 0.0265

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G53480

Predicted

interaction prediction

two hybrid

FSW = 0.0318

Unknown

IMPORTIN BETA-2 PUTATIVE
AT3G55810

Predicted

Affinity Capture-MS

FSW = 0.0340

Unknown

PYRUVATE KINASE PUTATIVE
AT4G18800

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G16980

Predicted

interaction prediction

FSW = 0.0257

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G54840

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0164

Unknown

SGP1 GTP BINDING
AT3G06720

Predicted

interaction prediction

two hybrid

FSW = 0.0138

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT4G39160

Predicted

Synthetic Rescue

FSW = 0.0196

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0318

Unknown

A37 PROTEIN HETERODIMERIZATION
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0318

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G07300

Predicted

interaction prediction

FSW = 0.0967

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454