Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61620 - ( RRP41 3-5-exoribonuclease/ RNA binding )
32 Proteins interacs with AT3G61620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G60500 | Experimental | FSW = 0.3001
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G03360 | ExperimentalReconstituted Complexin vitro | FSW = 0.6563
| Unknown | ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) RNA BINDING / EXONUCLEASE |
AT1G60080 | Experimental | FSW = 0.1441
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT2G25355 | Experimental | FSW = 0.2838
| Unknown | EXONUCLEASE-RELATED |
AT4G27490 | Experimental | FSW = 0.2333
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G07750 | Experimental | FSW = 0.3673
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G46210 | Experimental | FSW = 0.2579
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT2G47610 | PredictedSynthetic Rescue | FSW = 0.0377
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT3G06530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0251
| Unknown | BINDING |
AT5G47010 | PredictedAffinity Capture-Western | FSW = 0.0537
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT2G37790 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0110
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G43900 | Predictedinteraction prediction | FSW = 0.0320
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT5G35910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1333
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G72440 | PredictedPhenotypic Suppressioninteraction predictionCo-expression | FSW = 0.0373
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0679
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G65440 | PredictedCo-purification | FSW = 0.1429
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT4G17620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0399
| Unknown | GLYCINE-RICH PROTEIN |
AT1G33980 | PredictedAffinity Capture-Western | FSW = 0.1385
| Unknown | SMG-4/UPF3 FAMILY PROTEIN |
AT2G39260 | PredictedAffinity Capture-Western | FSW = 0.0731
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT4G32175 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4044
| Unknown | RNA BINDING |
AT5G01670 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0196
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1850
| Unknown | EXORIBONUCLEASE-RELATED |
AT2G17510 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.2041
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G17760 | PredictedSynthetic Rescue | FSW = 0.0192
| Unknown | CSTF77 PROTEIN BINDING |
AT3G46960 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.1089
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G12990 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionEnriched domain pairGene neighbors method | FSW = 0.3768
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT1G54440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1837
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT1G33390 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0333
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G02690 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0500
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT5G01230 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0305
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT2G14250 | PredictedGene fusion method | FSW = 0.0282
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454