Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61650 - ( TUBG1 (GAMMA-TUBULIN) GTP binding / GTPase/ structural molecule )
33 Proteins interacs with AT3G61650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G12580 | PredictedSynthetic Lethality | FSW = 0.0257
| Class C:plasma membranemitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT4G14960 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.1498
| Class C:plasma membranecytoskeleton | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G06680 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridSynthetic Lethalityinterologs mappinginterologs mappinginterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSin vivo | FSW = 0.1800
| Class C:plasma membranecytoskeleton | SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING |
AT5G12250 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.3105
| Class C:plasma membranecytoskeleton | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20010 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2768
| Class C:plasma membrane | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G29550 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4386
| Class C:plasma membrane | TUB7 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G20890 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4676
| Class C:plasma membrane | TUB9 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G62690 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3478
| Class C:plasma membrane | TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G44110 | PredictedSynthetic Lethality | FSW = 0.0432
| Class C:plasma membrane | ATJ3 PROTEIN BINDING |
AT1G16030 | PredictedSynthetic Lethality | FSW = 0.0419
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G22060 | PredictedSynthetic Lethality | FSW = 0.0657
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
AT5G23860 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4676
| Class C:plasma membrane | TUB8 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G44340 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4676
| Class C:plasma membrane | TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G43810 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0161
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0181
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G05620 | PredictedShared biological functionEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.3827
| Class C:mitochondrioncytoskeleton | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT4G05190 | PredictedReconstituted ComplexEnriched domain pair | FSW = 0.1346
| Class C:cytoskeleton | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1010
| Class C:cytoskeleton | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G75780 | PredictedShared biological functionEnriched domain pairPhylogenetic profile method | FSW = 0.4302
| Unknown | TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G25980 | PredictedSynthetic LethalityColocalization | FSW = 0.1280
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G08780 | Predictedinteraction predictionSynthetic LethalityAffinity Capture-Westerninterologs mapping | FSW = 0.0864
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | Predictedinteraction predictionSynthetic Lethalityinterologs mappingAffinity Capture-Western | FSW = 0.1432
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G22480 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0583
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT1G30825 | Predictedinterologs mapping | FSW = 0.0777
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT2G23070 | Predictedinterologs mapping | FSW = 0.0316
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1021
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G27180 | PredictedReconstituted Complex | FSW = 0.2149
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G17410 | Predictedtwo hybridtwo hybridReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MSSynthetic Rescueinteraction prediction | FSW = 0.1810
| Unknown | TUBULIN FAMILY PROTEIN |
AT5G23290 | Predictedinteraction predictionSynthetic LethalityAffinity Capture-Western | FSW = 0.1104
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G49510 | PredictedSynthetic LethalityAffinity Capture-Westerninteraction prediction | FSW = 0.0852
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT4G39050 | PredictedSynthetic Lethality | FSW = 0.3135
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT3G49650 | PredictedSynthetic Lethality | FSW = 0.1241
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G62700 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2846
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454