Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61860 - ( RSP31 RNA binding / nucleic acid binding / nucleotide binding )

12 Proteins interacs with AT3G61860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55310

Experimental

confocal microscopy

FSW = 0.5664

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

 SR33 RNA BINDING / PROTEIN BINDING
AT4G25500

Experimental

pull down

FSW = 0.4706

Class A:

nucleus

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

 ATRSP35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G02840

Experimental

pull down

FSW = 0.2771

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37340

Experimental

Reconstituted Complex

FSW = 0.4455

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT1G23860

Experimental

Reconstituted Complex

FSW = 0.4605

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) PROTEIN BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.3920

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT3G60020

Experimental

pull down

FSW = 0.0938

Class A:

nucleus

Class D:

cytosol (p = 0.67)

 ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G53720

Experimental

pull down

Reconstituted Complex

in vitro

FSW = 0.2722

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G53030

Experimental

biochemical

in vitro

FSW = 0.0110

Unknown

 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT1G09760

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.0562

Class C:

nucleus

 U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT3G50670

Predicted

Shared biological function

Co-expression

FSW = 0.0561

Class C:

nucleus

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G46610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0426

Unknown

 ARGININE/SERINE-RICH SPLICING FACTOR PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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