Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G61890 - ( ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) transcription activator/ transcription factor )
15 Proteins interacs with AT3G61890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G65310 | ExperimentalReconstituted Complexin vitroaffinity technology | FSW = 0.0863
| Class A:nucleusClass D:nucleus (p = 0.78) | ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G79950 | Predictedtwo hybrid | FSW = 0.1111
| Class C:nucleus | HELICASE-RELATED |
AT4G34430 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0060
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G17790 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT2G46680 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.0803
| Class C:nucleus | ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G19960 | PredictedPhenotypic Enhancement | FSW = 0.0523
| Unknown | ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR |
AT3G25980 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G79000 | PredictedPhenotypic Enhancement | FSW = 0.0234
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT1G26830 | Predictedtwo hybrid | FSW = 0.0146
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G27880 | Predictedtwo hybrid | FSW = 0.0593
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
AT1G53710 | Predictedtwo hybrid | FSW = 0.0307
| Unknown | HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G27960 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G46290 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
AT5G47240 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | ATNUDT8 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 8) HYDROLASE |
AT4G00730 | PredictedPhenotypic Suppression | FSW = 0.0381
| Unknown | ANL2 (ANTHOCYANINLESS 2) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454