Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62030 - ( peptidyl-prolyl cis-trans isomerase chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) )
26 Proteins interacs with AT3G62030Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42980 | Experimentalenzymatic study | FSW = 0.0106
| Class A:plastidClass B:plasma membraneperoxisomenucleusmitochondrionextracellularcytosol | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT3G26060 | Experimentalenzymatic study | FSW = 0.0920
| Class A:plastidClass B:nucleusextracellularClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ATPRX Q ANTIOXIDANT/ PEROXIREDOXIN |
AT3G51970 | Experimentalpull down | FSW = 0.0290
| Unknown | ATSAT1 (ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1) ACYLTRANSFERASE |
AT3G44310 | PredictedAffinity Capture-Western | FSW = 0.0276
| Class C:plastidnucleus | NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.0381
| Class C:plastidnucleus | DDL (DAWDLE) |
AT2G45960 | PredictedAffinity Capture-MS | FSW = 0.0214
| Class C:plastid | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G62880 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0224
| Class C:nucleus | ARAC10 GTP BINDING |
AT4G16830 | Predictedinterologs mapping | FSW = 0.0156
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT4G21010 | Predictedtwo hybrid | FSW = 0.0158
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT4G25210 | PredictedSynthetic Rescue | FSW = 0.1645
| Class C:nucleus | TRANSCRIPTION REGULATOR |
AT2G41190 | PredictedAffinity Capture-MS | FSW = 0.0920
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G64230 | Predictedinterologs mapping | FSW = 0.0350
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT4G19690 | Predictedinterologs mappingco-fractionationCo-fractionation | FSW = 0.1354
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT5G02490 | Predictedinterologs mapping | FSW = 0.0316
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G06090 | Predictedinterologs mapping | FSW = 0.1408
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT1G12730 | PredictedAffinity Capture-MS | FSW = 0.0765
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G57660 | Predictedtwo hybridPhenotypic Enhancementtwo hybridbiochemical | FSW = 0.0240
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT2G29940 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G47090 | Predictedinterologs mappinginterologs mapping | FSW = 0.0918
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G02100 | Predictedinterologs mapping | FSW = 0.0129
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT2G27920 | PredictedReconstituted Complex | FSW = 0.0400
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G31260 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0613
| Unknown | APG9 (AUTOPHAGY 9) |
AT4G25950 | Predictedinterologs mapping | FSW = 0.0291
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G33200 | Predictedinterologs mapping | FSW = 0.0919
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT4G37880 | Predictedinterologs mapping | FSW = 0.1214
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454