Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G62760 - ( ATGSTF13 glutathione transferase )
46 Proteins interacs with AT3G62760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0096
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT1G02920 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0220
| Unknown | GSTF7 COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT4G29130 | Predictedin vitrotwo hybrid | FSW = 0.0109
| Unknown | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G78380 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0379
| Unknown | ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT2G30860 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0970
| Unknown | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
AT4G02520 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1200
| Unknown | ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT4G16660 | PredictedSynthetic Lethality | FSW = 0.0939
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT2G30870 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1000
| Unknown | GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT5G10350 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-crystal StructureSynthetic Lethality | FSW = 0.1389
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT1G11870 | Predictedinterologs mapping | FSW = 0.0998
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G45300 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0814
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G10070 | PredictedColocalization | FSW = 0.0580
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G62880 | PredictedAffinity Capture-MS | FSW = 0.0596
| Unknown | ARAC10 GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.0511
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G36490 | Predictedinterologs mapping | FSW = 0.0907
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G23900 | PredictedPhenotypic EnhancementAffinity Capture-WesternPhenotypic EnhancementSynthetic LethalityReconstituted Complexinterologs mappingSynthetic Rescue | FSW = 0.0443
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT5G26340 | PredictedSynthetic Rescue | FSW = 0.0627
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G02930 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0385
| Unknown | ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) GLUTATHIONE TRANSFERASE |
AT1G07180 | Predictedtwo hybrid | FSW = 0.0051
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT3G04460 | PredictedReconstituted Complex | FSW = 0.1346
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT3G60180 | PredictedSynthetic Rescue | FSW = 0.1134
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0442
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G02670 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | DNA REPAIR PROTEIN PUTATIVE |
AT4G01850 | PredictedPhenotypic Enhancement | FSW = 0.0267
| Unknown | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT1G72560 | PredictedAffinity Capture-MS | FSW = 0.0877
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT4G25340 | Predictedtwo hybridCo-purification | FSW = 0.0599
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G33710 | PredictedAffinity Capture-Western | FSW = 0.0939
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G52300 | PredictedReconstituted Complex | FSW = 0.0609
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G03190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0966
| Unknown | ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) GLUTATHIONE TRANSFERASE |
AT2G29540 | PredictedColocalizationinterologs mapping | FSW = 0.0981
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G17130 | PredictedReconstituted Complex | FSW = 0.0513
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0637
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G75290 | PredictedSynthetic Lethalityinterologs mappingReconstituted Complexinterologs mappingSynthetic Lethality | FSW = 0.0433
| Unknown | OXIDOREDUCTASE ACTING ON NADH OR NADPH |
AT2G33560 | PredictedPhenotypic SuppressionSynthetic Lethalitysynthetic growth defect | FSW = 0.1426
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT1G54560 | Predictedbiochemical | FSW = 0.0240
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G77780 | Predictedinterologs mapping | FSW = 0.0906
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G16230 | PredictedCo-purification | FSW = 0.1087
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G23080 | PredictedCo-crystal Structure | FSW = 0.0390
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G34750 | PredictedCo-purification | FSW = 0.0689
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT4G04700 | Predictedinterologs mappingReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexCo-purificationReconstituted ComplexReconstituted ComplexCo-purificationSynthetic Lethalityinterologs mappingSynthetic Rescuetwo hybridfar western blottingCo-crystal Structure | FSW = 0.1522
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G48630 | PredictedCo-crystal Structure | FSW = 0.0698
| Unknown | CYCLIN FAMILY PROTEIN |
AT4G04955 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT5G17220 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1603
| Unknown | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454