Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62930 - ( glutaredoxin family protein )
31 Proteins interacs with AT3G62930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G56190 | Predictedinterologs mapping | FSW = 0.0042
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G62870 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0226
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20550 | Predictedco-fractionationCo-fractionationsynthetic growth defect | FSW = 0.0330
| Unknown | DDL (DAWDLE) |
AT1G66430 | Predictedinterologs mapping | FSW = 0.1111
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT5G40370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3556
| Unknown | GLUTAREDOXIN PUTATIVE |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0729
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT5G64630 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G16560 | Predictedinterologs mapping | FSW = 0.0219
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT3G52890 | PredictedbiochemicalSynthetic Rescuebiochemical | FSW = 0.1994
| Unknown | KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G54510 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0735
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G61210 | Predictedinterologs mapping | FSW = 0.0162
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G80710 | PredictedSynthetic Lethality | FSW = 0.0284
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G43190 | Predictedsynthetic growth defect | FSW = 0.0429
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT5G13840 | Predictedinterologs mapping | FSW = 0.0271
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT5G60950 | Predictedinterologs mapping | FSW = 0.0245
| Unknown | COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) |
AT5G67220 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSinterologs mapping | FSW = 0.1422
| Unknown | NITROGEN REGULATION FAMILY PROTEIN |
AT3G62960 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4267
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G30540 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6383
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15680 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G06830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3386
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G18600 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15700 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6741
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15660 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15690 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G47880 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G03020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5926
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15670 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.6667
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G47870 | PredictedPhylogenetic profile method | FSW = 0.5470
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G63030 | PredictedPhylogenetic profile method | FSW = 0.5681
| Unknown | GLUTAREDOXIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454