Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G62960 - ( glutaredoxin family protein )
33 Proteins interacs with AT3G62960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternReconstituted Complextwo hybridCo-crystal Structuresynthetic growth defect | FSW = 0.0271
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G64270 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0291
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G11250 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G40370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3413
| Unknown | GLUTAREDOXIN PUTATIVE |
AT3G21620 | Predictedtwo hybrid | FSW = 0.1203
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0483
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT5G61000 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT1G72560 | Predictedtwo hybrid | FSW = 0.0474
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT1G72330 | PredictedAffinity Capture-MS | FSW = 0.0295
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G50110 | Predictedtwo hybrid | FSW = 0.1029
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G40010 | Predictedtwo hybridReconstituted Complex | FSW = 0.0414
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT3G13710 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | PRA1F4 (PRENYLATED RAB ACCEPTOR 1F4) |
AT3G13210 | PredictedPhenotypic Enhancement | FSW = 0.0248
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G21480 | Predictedtwo hybrid | FSW = 0.0583
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G53940 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | YIPPEE FAMILY PROTEIN |
AT5G57630 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | CIPK21 (CBL-INTERACTING PROTEIN KINASE 21) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0353
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G30540 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6122
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15700 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6024
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15680 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15660 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62930 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4267
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G18600 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15690 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G03020 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5248
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G47880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G06830 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2962
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT3G62950 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G15670 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.5925
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT2G47870 | PredictedPhylogenetic profile method | FSW = 0.5251
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454