Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63010 - ( GID1B (GA INSENSITIVE DWARF1B) hydrolase )

9 Proteins interacs with AT3G63010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01570

Experimental

two hybrid

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two hybrid

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.3036

Unknown

RGA1 (REPRESSOR OF GA1-3 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G14920

Experimental

two hybrid

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two hybrid

two hybrid

FSW = 0.3865

Unknown

GAI (GIBBERELLIC ACID INSENSITIVE) TRANSCRIPTION FACTOR
AT5G17490

Experimental

two hybrid

FSW = 0.4148

Unknown

RGL3 (RGA-LIKE PROTEIN 3) TRANSCRIPTION FACTOR
AT1G66350

Experimental

two hybrid

FSW = 0.4148

Unknown

RGL1 (RGA-LIKE 1) TRANSCRIPTION FACTOR
AT3G03450

Experimental

two hybrid

FSW = 0.2177

Unknown

RGL2 (RGA-LIKE 2) TRANSCRIPTION FACTOR
AT4G24210

Experimental

FSW = 0.3565

Unknown

SLY1 (SLEEPY1)
AT5G27320

Predicted

Shared biological function

Co-expression

FSW = 0.4831

Unknown

GID1C (GA INSENSITIVE DWARF1C) HYDROLASE
AT5G23530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2657

Unknown

ATCXE18 (ARABIDOPSIS THALIANA CARBOXYESTERASE 18) CARBOXYLESTERASE
AT3G05120

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

GID1A (GA INSENSITIVE DWARF1A) HYDROLASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454