Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63150 - ( MIRO2 (MIRO-RELATED GTP-ASE 2) GTPase/ calcium ion binding )
34 Proteins interacs with AT3G63150Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G03860 | Predictedsynthetic growth defect | FSW = 0.0586
| Unknown | ATPHB2 (PROHIBITIN 2) |
AT2G07698 | Predictedsynthetic growth defect | FSW = 0.0351
| Unknown | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G02130 | PredictedPhenotypic Enhancement | FSW = 0.0039
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G64790 | Predictedsynthetic growth defect | FSW = 0.0048
| Unknown | BINDING |
AT5G27540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2593
| Unknown | MIRO1 (MIRO-RELATED GTP-ASE 1) GTP BINDING |
AT5G40660 | Predictedsynthetic growth defect | FSW = 0.0539
| Unknown | ATP12 PROTEIN-RELATED |
AT1G53530 | Predictedsynthetic growth defect | FSW = 0.0120
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT5G57300 | Predictedsynthetic growth defect | FSW = 0.0256
| Unknown | UBIE/COQ5 METHYLTRANSFERASE FAMILY PROTEIN |
AT3G18480 | PredictedAffinity Capture-Western | FSW = 0.0208
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT2G29540 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.0120
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G26460 | Predictedtwo hybridtwo hybrid | FSW = 0.0789
| Unknown | RED FAMILY PROTEIN |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0781
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G41770 | Predictedtwo hybridtwo hybrid | FSW = 0.0198
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G09980 | Predictedtwo hybridtwo hybrid | FSW = 0.0566
| Unknown | EMB1691 (EMBRYO DEFECTIVE 1691) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE/ METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
AT1G07430 | Predictedsynthetic growth defect | FSW = 0.0483
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G44820 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0497
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT1G69750 | Predictedsynthetic growth defect | FSW = 0.0360
| Unknown | COX19 FAMILY PROTEIN |
AT1G76310 | PredictedAffinity Capture-Western | FSW = 0.0480
| Unknown | CYCB24 (CYCLIN B24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G40090 | Predictedsynthetic growth defect | FSW = 0.0618
| Unknown | ATATH9 TRANSPORTER |
AT3G01090 | Predictedsynthetic growth defect | FSW = 0.0037
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G50960 | Predictedsynthetic growth defect | FSW = 0.0188
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0210
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT4G04460 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0193
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT4G04880 | Predictedsynthetic growth defect | FSW = 0.0288
| Unknown | ADENOSINE/AMP DEAMINASE FAMILY PROTEIN |
AT4G30480 | Predictedsynthetic growth defect | FSW = 0.0154
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G30530 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0945
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT4G39330 | PredictedAffinity Capture-Western | FSW = 0.0034
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G13400 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0357
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G67540 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0249
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G05310 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1214
| Unknown | MIRO3 GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454