Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63400 - ( peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein )

12 Proteins interacs with AT3G63400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G16610

Experimental

pull down

FSW = 0.1048

Class A:

nucleus

Class D:

unclear (p = 0.09)

nucleus (p = 0.78)

 SR45 RNA BINDING / PROTEIN BINDING
AT3G50670

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0283

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G18810

Experimental

two hybrid

Reconstituted Complex

FSW = 0.4211

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

two hybrid

Reconstituted Complex

FSW = 0.3789

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G09140

Experimental

pull down

confocal microscopy

FSW = 0.3036

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SF2/ASF-LIKE SPLICING MODULATOR (SRP30)
AT2G43370

Experimental

confocal microscopy

FSW = 0.4689

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT1G02840

Experimental

pull down

confocal microscopy

two hybrid

Reconstituted Complex

FSW = 0.2771

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G62190

Experimental

confocal microscopy

FSW = 0.1185

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PRH75 ATP-DEPENDENT HELICASE/ DEAD/H-BOX RNA HELICASE BINDING
AT2G27030

Experimental

filter binding

FSW = 0.0198

Class B:

vacuole

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

 CAM5 (CALMODULIN 5) CALCIUM ION BINDING
AT5G64960

Experimental

confocal microscopy

FSW = 0.1250

Class B:

unclear

nucleus

Class D:

nucleus (p = 0.78)

 CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE
AT5G61600

Experimental

FSW = 0.4183

Unknown

 ETHYLENE-RESPONSIVE ELEMENT-BINDING FAMILY PROTEIN
AT2G43790

Experimental

FSW = 0.0281

Unknown

 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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