Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G66656 - ( AGL91 transcription factor )
22 Proteins interacs with AT3G66656Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0564
| Class C:nucleus | AMINOACYL-TRNA HYDROLASE |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:nucleus | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0259
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G59960 | PredictedAffinity Capture-MS | FSW = 0.0456
| Class C:nucleus | UNKNOWN PROTEIN |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0048
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0152
| Class C:nucleus | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0871
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G45850 | Predictedsynthetic growth defect | FSW = 0.0989
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G47160 | PredictedAffinity Capture-Western | FSW = 0.0465
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G79450 | PredictedAffinity Capture-MS | FSW = 0.0965
| Unknown | ALIS5 (ALA-INTERACTING SUBUNIT 5) |
AT1G59740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0527
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G06110 | PredictedAffinity Capture-MS | FSW = 0.0640
| Unknown | MKP2 (MAPK PHOSPHATASE 2) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.1163
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT4G33720 | Predictedtwo hybrid | FSW = 0.1210
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G30580 | PredictedAffinity Capture-MS | FSW = 0.0551
| Unknown | GTP BINDING |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0185
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454