Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00660 - ( DEAD/DEAH box helicase putative )
49 Proteins interacs with AT4G00660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G36130 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G10450 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G52150 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G63890 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0203
| Unknown | ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE |
AT1G17745 | Predictedinteraction prediction | FSW = 0.0059
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT2G33340 | PredictedCo-purification | FSW = 0.0699
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G58510 | PredictedSynthetic Lethality | FSW = 0.0347
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT3G48750 | PredictedSynthetic Lethality | FSW = 0.0191
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G09620 | PredictedAffinity Capture-MS | FSW = 0.0425
| Unknown | ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G53110 | PredictedSynthetic LethalityEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1132
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.1977
| Unknown | YLS8 CATALYTIC |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT2G43810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0801
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSinteraction prediction | FSW = 0.1055
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1099
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0789
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G33520 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0733
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G11170 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1075
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G03330 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1533
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT4G18040 | Predictedsynthetic growth defect | FSW = 0.0603
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G27980 | PredictedSynthetic Rescue | FSW = 0.0162
| Unknown | DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING |
AT5G40820 | Predictedsynthetic growth defect | FSW = 0.0213
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT2G14045 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | UNKNOWN PROTEIN |
AT5G42190 | Predictedtwo hybrid | FSW = 0.0037
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G66820 | Predictedtwo hybrid | FSW = 0.0174
| Unknown | UNKNOWN PROTEIN |
AT5G01580 | Predictedtwo hybrid | FSW = 0.0425
| Unknown | OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC |
AT4G36690 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0243
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G02080 | Predictedinterologs mappingSynthetic LethalityAffinity Capture-WesternSynthetic Rescue | FSW = 0.0774
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.1417
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT3G14010 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0697
| Unknown | CID4 (CTC-INTERACTING DOMAIN 4) PROTEIN BINDING |
AT3G45630 | PredictedSynthetic Lethality | FSW = 0.0478
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G58560 | Predictedinterologs mappinginterologs mappinginteraction prediction | FSW = 0.0715
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT1G49760 | Predictedinterologs mapping | FSW = 0.0793
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G60620 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0187
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0204
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0150
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0925
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G16970 | Predictedtwo hybrid | FSW = 0.0422
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G10960 | PredictedAffinity Capture-Westerninterologs mappingtwo hybridinterologs mappingAffinity Capture-WesternSynthetic Lethality | FSW = 0.0950
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G18230 | Predictedsynthetic growth defect | FSW = 0.0612
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT2G32070 | Predictedinterologs mappinginteraction prediction | FSW = 0.0952
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G15770 | Predictedinteraction prediction | FSW = 0.0839
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT1G01960 | Predictedinteraction prediction | FSW = 0.0165
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT3G61240 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1000
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH12) |
AT5G11200 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0819
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G02065 | PredictedEnriched domain pairGene fusion method | FSW = 0.1353
| Unknown | DEAD/DEAH BOX HELICASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454