Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00660 - ( DEAD/DEAH box helicase putative )

49 Proteins interacs with AT4G00660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G36130

Predicted

two hybrid

FSW = 0.0166

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT1G53850

Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G52150

Predicted

two hybrid

FSW = 0.0282

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G63890

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0203

Unknown

ATHDH (HISTIDINOL DEHYDROGENASE) HISTIDINOL DEHYDROGENASE
AT1G17745

Predicted

interaction prediction

FSW = 0.0059

Unknown

PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT2G33340

Predicted

Co-purification

FSW = 0.0699

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G58510

Predicted

Synthetic Lethality

FSW = 0.0347

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G48750

Predicted

Synthetic Lethality

FSW = 0.0191

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G09620

Predicted

Affinity Capture-MS

FSW = 0.0425

Unknown

ATP BINDING / AMINOACYL-TRNA LIGASE/ LEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G53110

Predicted

Synthetic Lethality

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1132

Unknown

LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE
AT5G08290

Predicted

Affinity Capture-MS

FSW = 0.1977

Unknown

YLS8 CATALYTIC
AT2G41500

Predicted

Affinity Capture-MS

FSW = 0.1004

Unknown

EMB2776 NUCLEOTIDE BINDING
AT2G43810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0801

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

interaction prediction

FSW = 0.1055

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1099

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G27720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0789

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G33520

Predicted

two hybrid

FSW = 0.0118

Unknown

ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G36170Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0733

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G11170

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.1075

Unknown

ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G03330

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.1533

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT4G18040

Predicted

synthetic growth defect

FSW = 0.0603

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G27980

Predicted

Synthetic Rescue

FSW = 0.0162

Unknown

DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT5G40820

Predicted

synthetic growth defect

FSW = 0.0213

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT2G14045

Predicted

two hybrid

FSW = 0.0162

Unknown

UNKNOWN PROTEIN
AT5G42190

Predicted

two hybrid

FSW = 0.0037

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G66820

Predicted

two hybrid

FSW = 0.0174

Unknown

UNKNOWN PROTEIN
AT5G01580

Predicted

two hybrid

FSW = 0.0425

Unknown

OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC
AT4G36690

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0243

Unknown

ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G02080Predicted

interologs mapping

Synthetic Lethality

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0774

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G60170

Predicted

Affinity Capture-MS

FSW = 0.1417

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT3G14010

Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0697

Unknown

CID4 (CTC-INTERACTING DOMAIN 4) PROTEIN BINDING
AT3G45630

Predicted

Synthetic Lethality

FSW = 0.0478

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G58560

Predicted

interologs mapping

interologs mapping

interaction prediction

FSW = 0.0715

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G49760

Predicted

interologs mapping

FSW = 0.0793

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G60620

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0187

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0204

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT3G60860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0150

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.0925

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G16970

Predicted

two hybrid

FSW = 0.0422

Unknown

ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G10960

Predicted

Affinity Capture-Western

interologs mapping

two hybrid

interologs mapping

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0950

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G18230

Predicted

synthetic growth defect

FSW = 0.0612

Unknown

TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT2G32070

Predicted

interologs mapping

interaction prediction

FSW = 0.0952

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G15770

Predicted

interaction prediction

FSW = 0.0839

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT1G01960

Predicted

interaction prediction

FSW = 0.0165

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT3G61240

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1000

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH12)
AT5G11200

Predicted

Enriched domain pair

Phylogenetic profile method

FSW = 0.0819

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G02065

Predicted

Enriched domain pair

Gene fusion method

FSW = 0.1353

Unknown

DEAD/DEAH BOX HELICASE FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454