Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00810 - ( 60S acidic ribosomal protein P1 (RPP1B) )
58 Proteins interacs with AT4G00810| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01280
   | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
| AT5G05520
| PredictedPhenotypic Suppression | FSW = 0.0350
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
| AT1G01100
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0625
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1A) |
| AT1G11260
| Predictedtwo hybrid | FSW = 0.0619
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G14010
| PredictedAffinity Capture-MS | FSW = 0.2827
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0201
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT2G04940
| Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2494
| Unknown | SCRAMBLASE-RELATED |
| AT3G09820
| PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3686
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
| AT4G13590
| Predictedsynthetic growth defect | FSW = 0.0568
| Unknown | UNKNOWN PROTEIN |
| AT5G15450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridtwo hybridAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1720
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G18870
| Predictedtwo hybrid | FSW = 0.3023
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
| AT5G47700
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0363
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
| AT1G63110
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2759
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
| AT3G46900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3927
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
| AT1G70580
| PredictedAffinity Capture-MS | FSW = 0.0538
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT5G59960
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4077
| Unknown | UNKNOWN PROTEIN |
| AT3G50670
| PredictedProtein-RNA | FSW = 0.0494
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT1G06960
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0926
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT1G30810
| PredictedAffinity Capture-MS | FSW = 0.3821
| Unknown | TRANSCRIPTION FACTOR |
| AT3G08980
| PredictedAffinity Capture-MS | FSW = 0.3500
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
| AT2G19980
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0508
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
| AT4G19680
| Predictedtwo hybrid | FSW = 0.0345
| Unknown | IRT2 IRON ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT4G10920
| PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT4G03210
| Predictedtwo hybrid | FSW = 0.0330
| Unknown | XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
| AT4G17190
| PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.1984
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
| AT1G05830
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4347
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
| AT1G06790
| PredictedAffinity Capture-MS | FSW = 0.2301
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G21370
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSColocalization | FSW = 0.2478
| Unknown | UNKNOWN PROTEIN |
| AT1G44180
| Predictedtwo hybrid | FSW = 0.0161
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
| AT1G55300
| Predictedtwo hybrid | FSW = 0.0403
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G74250
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4192
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT2G20410
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3835
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
| AT2G29680
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4461
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
| AT2G29940
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.4313
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT3G05760
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.2973
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G17630
| PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
| AT3G26690
| Predictedtwo hybrid | FSW = 0.0299
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
| AT3G47120
| Predictedtwo hybrid | FSW = 0.0269
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G50880
| Predictedtwo hybrid | FSW = 0.0342
| Unknown | HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN |
| AT3G52590 | PredictedAffinity Capture-MS | FSW = 0.3243
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G53880
| PredictedCo-purification | FSW = 0.2713
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT4G14240
| Predictedbiochemical | FSW = 0.0070
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
| AT5G24840
| PredictedSynthetic Lethality | FSW = 0.0311
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
| AT5G49970
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2493
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
| AT4G00980
| PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
| AT4G10480
| PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
| AT4G13020
| Predictedtwo hybrid | FSW = 0.0240
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G16265
| Predictedtwo hybrid | FSW = 0.1061
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT4G29910
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3918
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
| AT4G31770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4358
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
| AT5G01430
| Predictedtwo hybrid | FSW = 0.0760
| Unknown | GOT1-LIKE FAMILY PROTEIN |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0826
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G16040
| Predictedtwo hybrid | FSW = 0.0258
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
| AT5G20620 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | UBQ4 PROTEIN BINDING |
| AT5G59890
| PredictedAffinity Capture-MS | FSW = 0.2597
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
| AT3G44590
| Predictedtwo hybridCo-expression | FSW = 0.0317
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
| AT5G24510
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0482
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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