Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01100 - ( ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP transmembrane transporter/ AMP transmembrane transporter/ ATP transmembrane transporter/ binding )
35 Proteins interacs with AT4G01100Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.1765
| Class C:vacuole | HISTONE H4 |
AT5G66680 | Predictedtwo hybrid | FSW = 0.0043
| Class C:vacuole | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G16240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2634
| Class C:vacuole | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT3G55640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3075
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G61810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2909
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G14560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3277
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT4G26180 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3623
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G20240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1164
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G48970 | PredictedPhylogenetic profile method | FSW = 0.1016
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G21390 | PredictedPhylogenetic profile method | FSW = 0.2601
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G37890 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3478
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G53940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2137
| Class C:mitochondrion | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G40400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3200
| Unknown | UNKNOWN PROTEIN |
AT5G14320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0986
| Unknown | 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13) |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.2182
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2660
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G44860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0923
| Unknown | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
AT2G28740 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.4476
| Unknown | HIS4 DNA BINDING |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0021
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2751
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT1G78960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3200
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT3G09640 | Predictedtwo hybrid | FSW = 0.0434
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1801
| Unknown | HISTONE H4 |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4444
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2036
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4311
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | UNKNOWN PROTEIN |
AT5G06140 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G20560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1872
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MSinterologs mappingtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.1745
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT2G26060 | PredictedGene fusion method | FSW = 0.0249
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454