Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01400 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s COG4 transport (InterProIPR013167) Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT5G461001) Has 11639 Blast hits to 3936 proteins in 180 species Archae - 0 Bacteria - 2 Metazoa - 206 Fungi - 141 Plants - 11004 Viruses - 0 Other Eukaryotes - 286 (source NCBI BLink) )
14 Proteins interacs with AT4G01400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedSynthetic Lethality | FSW = 0.0426
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G02130 | Predictedinterologs mapping | FSW = 0.0442
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G31780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0439
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G73430 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3975
| Unknown | SEC34-LIKE FAMILY PROTEIN |
AT1G67930 | PredictedReconstituted Complexin vitroin vivoin vivoin vitro | FSW = 0.2857
| Unknown | GOLGI TRANSPORT COMPLEX PROTEIN-RELATED |
AT4G24840 | PredictedReconstituted Complexin vitroin vivoAffinity Capture-MSin vivoin vitro | FSW = 0.0863
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN PROTEIN TRANSPORT GOLGI ORGANIZATION LOCATED IN VACUOLE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG COMPLEX COMPONENT COG2 (INTERPROIPR009316) HAS 214 BLAST HITS TO 204 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 105 FUNGI - 56 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT3G07680 | Predictedtwo hybrid | FSW = 0.0196
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G51430 | Predictedin vivoin vivoin vivoAffinity Capture-MSReconstituted Complex | FSW = 0.0863
| Unknown | EYE (EMBRYO YELLOW) |
AT3G22845 | Predictedtwo hybridtwo hybrid | FSW = 0.0910
| Unknown | EMP24/GP25L/P24 PROTEIN-RELATED |
AT3G12110 | PredictedSynthetic Lethality | FSW = 0.0370
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G24350 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1591
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT5G16300 | Predictedin vivoin vivoin vivoin vitroin vitroin vitroReconstituted ComplexCo-expression | FSW = 0.2500
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) HAS 204 BLAST HITS TO 183 PROTEINS IN 76 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 127 FUNGI - 34 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
AT2G17980 | Predictedinterologs mapping | FSW = 0.2344
| Unknown | ATSLY1 PROTEIN TRANSPORTER |
AT3G54630 | Predictedtwo hybridinteraction prediction | FSW = 0.0435
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454