Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G01400 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s COG4 transport (InterProIPR013167) Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT5G461001) Has 11639 Blast hits to 3936 proteins in 180 species Archae - 0 Bacteria - 2 Metazoa - 206 Fungi - 141 Plants - 11004 Viruses - 0 Other Eukaryotes - 286 (source NCBI BLink) )

14 Proteins interacs with AT4G01400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G49240

Predicted

Synthetic Lethality

FSW = 0.0426

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G02130

Predicted

interologs mapping

FSW = 0.0442

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G31780

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0439

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G73430

Predicted

two hybrid

two hybrid

interologs mapping

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3975

Unknown

SEC34-LIKE FAMILY PROTEIN
AT1G67930

Predicted

Reconstituted Complex

in vitro

in vivo

in vivo

in vitro

FSW = 0.2857

Unknown

GOLGI TRANSPORT COMPLEX PROTEIN-RELATED
AT4G24840

Predicted

Reconstituted Complex

in vitro

in vivo

Affinity Capture-MS

in vivo

in vitro

FSW = 0.0863

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN PROTEIN TRANSPORT GOLGI ORGANIZATION LOCATED IN VACUOLE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S COG COMPLEX COMPONENT COG2 (INTERPROIPR009316) HAS 214 BLAST HITS TO 204 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 105 FUNGI - 56 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT3G07680

Predicted

two hybrid

FSW = 0.0196

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT5G51430

Predicted

in vivo

in vivo

in vivo

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0863

Unknown

EYE (EMBRYO YELLOW)
AT3G22845

Predicted

two hybrid

two hybrid

FSW = 0.0910

Unknown

EMP24/GP25L/P24 PROTEIN-RELATED
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0370

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G24350

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.1591

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT5G16300

Predicted

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

Reconstituted Complex

Co-expression

FSW = 0.2500

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S VPS51/VPS67 (INTERPROIPR014812) HAS 204 BLAST HITS TO 183 PROTEINS IN 76 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 127 FUNGI - 34 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK)
AT2G17980

Predicted

interologs mapping

FSW = 0.2344

Unknown

ATSLY1 PROTEIN TRANSPORTER
AT3G54630

Predicted

two hybrid

interaction prediction

FSW = 0.0435

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454